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Do we have an editing criteria for hippocampal inclusion/exclusion error in
recon_all and in subfields?
Best,
Saurabh
From: Jindal, Saurabh
Sent: Thursday, April 22, 2021 2:03 PM
To: Freesurfer support list
Subject
: [Freesurfer] Hippocampal Subfields
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Hi Saurabh,
you have to run (and QC) recon-all before,
Best,
Philipp
Von: freesurfer-boun...@nmr.mgh.harvard.edu
im Auftrag von Jindal, Saurabh
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Hi experts,
I am focusing on hippocampus for my work using subfield analysis on freesurfer
7.1. Is there is way to run the container only for subfields or do we have to
run recon_all on the subject first always? Thanks.
Saurabh
Postdoc Research Fell
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Thank you very much Eugenio.
Regards,
Saurabh
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Jindal, Saurabh
Sent: Tuesday, April 20, 2021 11:54 AM
To: Freesurfer support list
Subject: Re: [Freesurfer
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From: on behalf of "Jindal, Saurabh"
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Date: Tuesday, April 20, 2021 at 12:14
To: Freesurfer support list
Subject: Re: [Freesurfer] Hipppocampal segmentation on freesurfer
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From: on behalf of "Jindal, Saurabh"
Reply-To: Freesurfer support list
Date: Tuesday, April 20, 2021 at 11:30
To: freesurfer
Subject: [Freesurfer] Hipppocampal segmentation on freesurfer
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Hi experts,
I am working on freesurfer 7.1 now and my ROI is hippocampus, but it seems that
there is some non-hippocampal inclusion in the form of choroid plexus and
adjacent peri-ventricular white matter. Do we have a standard cutoff criterion
for
analysis
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No, not yet. FLAIR itself would probably not be for this anyway as it usually
does not have good gray/white contrast
On 4/19/2021 10:00 AM, Jindal, Saurabh wrote:
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Hi experts
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Hi experts,
Could we analyze FLAIR images using freesurfer without having T1 images?
Saurabh
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