External Email - Use Caution Okay, so could I expect better segmentation results from that without having adjacent choroid plexus/white matter included as hippocampus.
Saurabh ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Tuesday, April 20, 2021 11:06 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Hipppocampal segmentation on freesurfer * External Email - Caution * If you’re only/mostly interested in the hippocampus, I’d encourage you to try the subfield module ?? Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://secure-web.cisco.com/1jbrnfE7ASTieSRrFULjRTTLKXWnwHAhue72Z4nJzPdABrM7Jb4OL2geHxgWyIwDOW8tAS0SufAbDU4sJF-UqW6scrcXeksEzOfiNHoBlRBVPs25gBaRO1c7_uh2NC_fptZG6vfUEhnpmmoZjBeYaU860A0CIpGi4foi8jgUGtf861MFhzXsIy5KkZx49J3odAvidiSBOS0v8jw2TpPmNEGua_lCrKyLHBpCaT9EBdw3QudmMb_KiAtheALArBkivzVFqHWSzIjMCeCq2mU_ALQ/http%3A%2F%2Fwww.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Jindal, Saurabh" <jind...@wustl.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, April 20, 2021 at 11:39 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Hipppocampal segmentation on freesurfer External Email - Use Caution External Email - Use Caution Hi Eugenio, This is recon-all (aseg.mgz), and not the subfields. Thanks Saurabh ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Iglesias Gonzalez, Juan E. <jiglesiasgonza...@mgh.harvard.edu> Sent: Tuesday, April 20, 2021 10:36 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Hipppocampal segmentation on freesurfer * External Email - Caution * Dear Saurabh, Is this recon-all (aseg.mgz), or the hippocampal subfield module? Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://secure-web.cisco.com/1jbrnfE7ASTieSRrFULjRTTLKXWnwHAhue72Z4nJzPdABrM7Jb4OL2geHxgWyIwDOW8tAS0SufAbDU4sJF-UqW6scrcXeksEzOfiNHoBlRBVPs25gBaRO1c7_uh2NC_fptZG6vfUEhnpmmoZjBeYaU860A0CIpGi4foi8jgUGtf861MFhzXsIy5KkZx49J3odAvidiSBOS0v8jw2TpPmNEGua_lCrKyLHBpCaT9EBdw3QudmMb_KiAtheALArBkivzVFqHWSzIjMCeCq2mU_ALQ/http%3A%2F%2Fwww.jeiglesias.com<http://secure-web.cisco.com/1C0u8xLvDh4rlmpEJA1NgIB9ww1gy1q7aBCCorYzXS_bga3ESZfuxRTmq_f61IYiq-4CVUbbG9oarENS_seMmdRQzwHJ9rCx6Y26tbt-SnIp4cfPTggOGOv88bgGwBuJF0uLYoZOMD5xNNRMSmUYp7FHyA7XvHGsAEcVCM7njP9AlzsrK1YGQd0Imc6rz17ipZbkOe5TEK8BaiyLe02Jnrv7l-onBsLBb4plIgxQES6oncBpR9aQLbfRMzlTOo5BkgPo4GLf9OujZ2JZBDLe8lA/http%3A%2F%2Fwww.jeiglesias.com> From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Jindal, Saurabh" <jind...@wustl.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Tuesday, April 20, 2021 at 11:30 To: freesurfer <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Hipppocampal segmentation on freesurfer External Email - Use Caution External Email - Use Caution Hi experts, I am working on freesurfer 7.1 now and my ROI is hippocampus, but it seems that there is some non-hippocampal inclusion in the form of choroid plexus and adjacent peri-ventricular white matter. Do we have a standard cutoff criterion for hippocampal inclusion? Like how many voxels for how many slices is okay to let it pass? Saurabh ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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