If I have the same subject on 2 different computers, but I edited the control points on one, can I just copy the tmp/control.dat file over to the other computer and rerun autorecon2-cp, or are there other files it refrences?
Thanks-- -Jake
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Freesurfer
I am guessing that this is a general file error, not something
specifically related to freesurfer, but was wondering if anyone had an
idea on what might be wrong.
18 vertices at 20 distance
writing curvature file
/private/Network/Servers/dns2.bmap.ucla.edu/Volumes/BMC3/BMCUsers3/ascott/Documents/
I was running autorecon2-cp and it said it finished with errors, below
are the recon-all.log and recon-all-status.log, I couldn't figure out
what the error is.
Mon Aug 7 10:37:16 PDT 2006
[EMAIL PROTECTED] Intensity Normalization2 Mon Aug 7 10:37:16 PDT 2006
[EMAIL PROTECTED] Mask BFS Mon Aug
I was wondering if setting the watershed parameters higher and
rerunning autorecon2 would expand the pial surface line if the outer
rim of the brain is being left out? Or would this not fix the problem?
Thanks
--
-Jake
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Freesurfer mailing list
Freesur
I was wondering if it is possible to queue up various subjects like if
the computers were going to be left for several days to run autorecon1
and 2 on a subject, and when that finishes move on to the next subject
etc. If it is not possible in freesurfer has anyone written a script
that I could use
I ran two brains through autorecon2 and the pial line is drawn too
close at many parts and cuts off parts of the brain. I looked through
the website and only saw instructions for how to remove stuff and make
the pial line smaller. I was wondering if there is a command I can run
to expand the pial
I have run several instances of autorecon2 and have only got left
hemisphere data. The log file says that autorecon finished with errors
but I can not find where to find these errors. I believe that the
problem is the way the data being fed in is oriented so I was
wondering how I should reorient i
