[Freesurfer] Creating Labels

Hello, I am wondering how to generate a label in FreeSurfer from peak activation in a cluster - is there a specific command? Thank you. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesur

[Freesurfer] (no subject)

Hello - I'm wondering how to generate a label in FreeSurfer from peak activation in a cluster? Is there a specific command? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Beta Extraction

When I ran the following command (with our data), I got the average beta values for each segmentation i.e. only 5 beta values (as opposed to 5 beta values for each subject). mri_segstats --seg ocn.mgh --i beta.mgh --excludeid 0 --avgwf beta.clusters.dat That said, is it necessarily to run the

Re: [Freesurfer] Beta extraction

on the avgwf file On 11/29/2018 04:40 PM, Jahan, Bushra wrote: > I am wondering how to extract beta values from the clusters of task > functional data, particularly output of the multiple comparisons > correction? > > Aava Jahan > > >

[Freesurfer] Cortical & subcortical cluster size

Hi, I'm wondering which column in the FreeSurfer summary file represents the cluster size for the cortical and subcortical clusters. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Beta extraction

I am wondering how to extract beta values from the clusters of task functional data, particularly output of the multiple comparisons correction? Aava Jahan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailm