When I ran the following command (with our data), I got the average beta values for each segmentation i.e. only 5 beta values (as opposed to 5 beta values for each subject).
mri_segstats --seg ocn.mgh --i beta.mgh --excludeid 0 --avgwf beta.clusters.dat That said, is it necessarily to run the previous command for each subject (in order to extract 5 beta values for each subject) or is there way to extract betas for each subject from the group analysis? ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> Sent: Thursday, November 29, 2018 11:19:33 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Beta extraction Use something like mri_segstats --seg ocn.mgh --i beta.mgh --excludeid 0 --avgwf beta.clusters.dat See mri_glmfit-sim --help for more info on the OCN file and mri_segstats --help for info on the avgwf file On 11/29/2018 04:40 PM, Jahan, Bushra wrote: > I am wondering how to extract beta values from the clusters of task > functional data, particularly output of the multiple comparisons > correction? > > Aava Jahan > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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