Re: [Freesurfer] Problem with Monte Carlo Simulation

2014-04-29 Thread Jacqueline Elaine Fitzgerald
gt; > > > Jackie > > > > > > > > > > On 28 April 2014 18:11, Douglas N Greve > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > > > No, I mean using the --cache option which will use precomputed tables > > rather than

Re: [Freesurfer] Problem with Monte Carlo Simulation

2014-04-29 Thread Jacqueline Elaine Fitzgerald
n 04/24/2014 08:01 PM, Jacqueline Elaine Fitzgerald wrote: > > Hi Doug, > > > > Thank you for your reply. By precomputed do you mean the FDR in the > > GUI? Apologies I'm still new to the program! > > > > I am planning on running an ROI analysis so will ne

Re: [Freesurfer] Problem with Monte Carlo Simulation

2014-04-24 Thread Jacqueline Elaine Fitzgerald
irst of all, do you really need to run the simulation? If you are just > doing a whole hemisphere analysis on fsaverage, then you can use the > precomputed option. > > doug > > On 04/24/2014 02:20 PM, Jacqueline Elaine Fitzgerald wrote: > > Hi, > > > > I am hav

[Freesurfer] Problem with Monte Carlo Simulation

2014-04-24 Thread Jacqueline Elaine Fitzgerald
Hi, I am having problem when running the Monte Carlo script. The script seems to fail after only a few simulations but it does not give me any error message, it just says 'killed'. I am running it on 126 participants (2 groups of 63) and I have tried it on a number of different measures (sulc, are