Dear Freesurfers,
I need to generate a surface which lies halfway between the wm/gm border and
the pial
surface so that I can then import it in matlab using read_surf.m to get the
vertex coordinates and faces for the surface that, as I said, would not be the
pial surface, but defined at half co
Hi
Thanks guys for the reply, I have fixed this now.
ian
> -Original Message-
> From: dgw [mailto:dgwake...@gmail.com]
> Sent: 07 March 2012 19:55
> To: Nick Schmansky
> Cc: Ian Charest; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] freesurfer 5.1 error:
Hi again
More on this note:
Using the previous stable version 4.3.0 that I have installed here, I have
absolutely no problem in running the same process.
ian
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Ian Charest
Sent: 07 March
y orig.mgz in tkmedit and all seems fine.
Any Idea what could be going wrong?
Best Wishes
Ian Charest
==
talairach_avi.log:
/imaging/ic01/subjects/subject01/mri
/imaging/local/software/freesurfer/5.1.0/i686//bin/talairach_avi
--i orig.mgz --xfm transforms/talairach.auto.xfm
$Id: talairach
Hi Brian
I had to change the terminal config for it to use tcsh.
I think Ubuntu now uses The Debian Almquist shell (dash) and I have had
problems running freesurfer from it.
install tcsh using aptitude and then in the preferences of your terminal (Edit
> profile preferences) in the tab "title
I one should need a register.dat file here or even a
template file, as I want to generate a volume in RAS space, from a label which
I would think is also in RAS space.
As for the template file, should it be orig.mgz?
Any suggestions here would be appreciated!
