[Freesurfer] rmanova contrast file error

Dear Experts, I am running a rmanova using FSGD file and mri_glmfit. I have done the mris_preproc step, and am currently trying to do the mri_glmfit step. I keep getting an error that appears to be related to the contrast files and matricies (highlighted in yellow below) I have also attch

[Freesurfer] FW: long.qdec.table.dat

ch Institute THE UNIVERSITY OF SYDNEY Room 408, Level 4, M02K | 94 Mallett St Camperdown | NSW | 2050 | Australia T +61 2 9114 4138 F +61 9351 0930 E hhal5...@uni.sydney.edu.au | W www.rng.org.au From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Harry

[Freesurfer] long.qdec.table.dat

Hi all, I am currently doing longitundal processing. I have gone through the turtoial but still cannot find the answer. When creating a long.qdec.table.dat, should the first column entitled "fsid" be long or cross data? Cheers, Harry Harry Hallock | MPhil Candidate Regenerative Neurosc

[Freesurfer] Tksurfer abbreviations

Hi all, Apologies for this basic question, but im quite the newbie. I'mcurrently using tksurfer and got this result: surfer: filling (ctrl-c to cancel) done, 4646 vertices filled surfer: performing FDR on 1989 vertices MRISfdr2vwth(): np = 1989, nv = 163842, fdr = 0.05, vwth=2.24098 MRISfdr2

[Freesurfer] qdec - 3 timepoints

Hi, I'm currently doing a long analysis of a data set that contains two groups (training and control) and 3 timepoints (baseline -BL, follow up1- FU1 follow up2-FU2) I've put it through qdec. But for the analysis qdec only gives me one measure for long.thickness-avg, rate, pc1 and spc. How do

Re: [Freesurfer] Mixed-effects models for longitudinal data analysis in Freesurfer

Hi Martin, If you could make available that lme toolbox link, that would be great! Thanks for the help. Cheers, Harry From: jorge luis [jbernal0...@yahoo.es] Sent: Tuesday, 16 October 2012 8:16 AM To: Martin Reuter; Harry Hallock [hhal5...@uni.sydney.edu.au] Cc