Re: [Freesurfer] vertex indices in EPI space - mri_surf2vol registration issues

2022-02-18 Thread Gomez, Daniel
he closing of the if/else statement, otherwise the if branch (fillribbon) won't be covered and the output vtxvol file will have a wrong header. Regards, Daniel "Gomez, Daniel" writes: > Dear FS users, > > I’m trying to get surface indices from surfaces generated wi

[Freesurfer] vertex indices in EPI space - mri_surf2vol registration issues

2022-02-16 Thread Gomez, Daniel
Dear FS users, I’m trying to get surface indices from surfaces generated with recon-all into a volume in native functional/EPI space. I’m using mri_surf2vol for that, though if there is a better alternative solution, I’m happy to take it. My issue is that the output index volume (vtxvol) I get