Re: [Freesurfer] thickness measure in basal ganglia

2018-02-26 Thread Giovanni de Marco
t; Le 11 janv. 2018 à 02:27, Bruce Fischl a > écrit : > > > > Hi Giovanni​​ > > > > the basal ganglia are little balls of gray matter, so I'm not sure how > one would measure thickness there. We do supply volume for each nucleus > > > > cheers &g

[Freesurfer] thickness measure in basal ganglia

2018-01-10 Thread Giovanni de Marco
Hello, ​​ ​​ ​​ ​​ ​​ ​​ In stats-table, ​​ ​​ I did'n ​​ t find the thickness of ​​ ​​ ​​ ​​ basal ganglia. ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ ​​ Please, c ​​ an we ​​ get

[Freesurfer] qdec question

2017-12-30 Thread Giovanni de Marco
Hello, I’ve got a question concerning qdec running with freesurfer. I just downloaded the latest version of freesurfer. Before to run qdec, I read than I have to run "recon-all -s ID -all" (about 7 hours) and then recon-all -s ID -qcache (about 5'). So I tried it with one subject and everything i

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-10 Thread Giovanni de Marco
help Best Giovanni 2015-01-07 22:54 GMT+01:00 Giovanni de Marco : > Thanks Anastasia. > I try to rerun trac-all tomorrow. I let you know. > Giovanni > > 2015-01-07 22:50 GMT+01:00 Anastasia Yendiki >: > >> >> This is a plain text file, yes. >> >> On

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
Thanks Anastasia. I try to rerun trac-all tomorrow. I let you know. Giovanni 2015-01-07 22:50 GMT+01:00 Anastasia Yendiki : > > This is a plain text file, yes. > > On Wed, 7 Jan 2015, Giovanni de Marco wrote: > > Please, >> Could you tell me if this file is better ? I u

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
^@^@^@^@^@^@^@^@^@^A^E^@^@^H^@^@^@^A > ^@^@file:///^L^@^@^@^A^A^@^@Macintosh H^@^@^@^D^C^@^@^@€œ­è^@^@^@^H^ > @^@^@^@^D^@^@A¹^±Æ^@^@^@$^@^@^@^A^A^@^@E7566EA3-C427-3CD3- > 93BD-A1F59AF64343^X^@^@^@ > > > > On Wed, 7 Jan 2015, Giovanni de Marco wrote: > > Actually I use thi

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
Can I use this txt file for trac-all ? 2015-01-07 22:27 GMT+01:00 Giovanni de Marco : > Actually I use this gradient file (diffusion60directions.txt) below with > Trackvis and everything is fine. > > 0 0 0 > -0.164494 0.018226 0.98621 > -0.190456 0.462978 -0.865666 > -0.730

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
0.190397 -0.446439 -0.677724 -0.514302 0.525532 0 0 0 2015-01-07 22:21 GMT+01:00 Anastasia Yendiki : > > I can see what the name of the file is, but try running "more" on it or > opening it with a text editor. > > > On Wed, 7 Jan 2015, Giovanni de Marco wrote: > > For

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
with trac-all I used these two files in attached file. 2015-01-07 22:15 GMT+01:00 Giovanni de Marco : > Format txt > > 2015-01-07 22:08 GMT+01:00 Anastasia Yendiki >: > >> >> This is not a plain text file. What format is it in? >> >> >> On Wed, 7

Re: [Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
Format txt 2015-01-07 22:08 GMT+01:00 Anastasia Yendiki : > > This is not a plain text file. What format is it in? > > > On Wed, 7 Jan 2015, Giovanni de Marco wrote: > > it looks like thats in attached file >> >> 2015-01-07 21:55 GMT+01:00 Anastasia Yendiki

[Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
Please be advised, This message contained one or more of the following prohibited file types: (.zip,.bat,.exe,.pif,.scr). The file(s) have been automatically removed from the message, in order to protect the privacy of our patients and employees, and to protect the integrity of our systems and

[Freesurfer] ATTACHMENT REMOVED--Re: problem with the tracula pre-processing

2015-01-07 Thread Giovanni de Marco
Please be advised, This message contained one or more of the following prohibited file types: (.zip,.bat,.exe,.pif,.scr). The file(s) have been automatically removed from the message, in order to protect the privacy of our patients and employees, and to protect the integrity of our systems and