[Freesurfer] label

2015-03-04 Thread Fabrizio Piras
Dear FreeSurfers, I need to extract mean thickness from a manually defined label which is now in subjid/label (named mpfc.label) I tried with mris_anatomical_stats using the -l flag but here is what I got iMac-di-Mac:label fabriziopiras$ mris_anatomical_stats -l subjid/label/rh.cortex.label -b

Re: [Freesurfer] qdec roi analysis

2011-06-20 Thread fabrizio piras
ckness and analyze it with SPSS or whatever, I simply want to compute my vertex to vertex difference map limiting the analysis to that region. Is it possible with qdec? Best, Fabrizio --- Fabrizio Piras Ph.D. --- Fondazione I.R.C.C.S. S

[Freesurfer] qdec roi analysis

2011-06-20 Thread fabrizio piras
Dear all, I run a controls vs patients thickness analysis using qdec and got several results. Now, it is not entirely clear to me how to refine my surface-based analysis (still using qdec) into a ROI, the middle orbitofrontal region. Cheers, Fabrizio --- Fabrizio

[Freesurfer] subcortical roi

2011-02-15 Thread fabrizio piras
ve it as a .nii (or wathever format) ROI in ordero to export it and open it with other softwares (e.g. mricron, fsl etc)? thank you in advance Fabrizio Piras --- Fabrizio Piras Ph.D. --- Fondazione I.R.C.C.S. Santa Lucia Laboratorio di Neurop