ers.
2015-08-02 18:57 GMT+01:00 Bruce Fischl :
> try opening it in tksurfer and see if it complains
>
> On Sun, 2 Aug 2015, Fidel Alfaro Almagro wrote:
>
> Hi,
>>
>> Thanks for the quick answer.
>>
>> There was no error message in the previous steps.
>
Hi all,
Is there an explicit way to change the directory of the output file that
mris_make_surfaces creates?
This command creates a .out file in the directory from which the command
was run and the -output flags just allows the user to modify a part in the
middle of the name of that file.
Cheers
to automatically know if there was a problem in the sphere
creation?
Cheers.
2015-08-02 16:27 GMT+01:00 Bruce Fischl :
> hmm, something seems to be wrong maybe the the ?h.sphere. Can you try
> recreating it
> cheers
> Bruce
>
> On Sun, 2 Aug 2015, Fidel Alfaro Almagro wrote:
&
Hi all,
I received an error in one of the steps of recon-all. The error is "No such
file or directory" at the end of one of the registration processes.
The step was mris_register -curv. The command was:
mris_register -curv ../surf/lh.sphere
/average/lh.average.curvature.filled.buckner40.tif
../s
Thanks to both of you.
Cheers.
> no we haven't done them
> On Wed, 12 Jan 2011, Christophe Destrieux wrote:
>
>> I meant : am i right to think that we don't have any other parcellation
>> available showing the other labels Fidel would like to use ?
>> (I thought that maybe somebody localized thes
ersité François Rabelais de Tours
> http://www.u930.tours.inserm.fr/
>
> Laboratoire d'Anatomie - Faculté de Médecine - 10 Bd Tonnellé
> 37032 Tours - France
> tel (33) 2 47 36 61 36 - fax (33) 2 47 36 62 07
>
>
> - Mail original -
> De: "FIDEL ALFARO ALMAGR
Hi Freesurfer experts,
I would like to know what are the equivalent labels to
- Gyrus Intralmibic
- Sulcus semmi annularis
In the label file FreeSurferColorLUT.txt. I have checked the paper
"Automatic parcellation of human cortical gyri and sulci using standard
anatomical nomenclature" but the
el' dir? Ideally speaking, I'd like to have a
>>>>>> ?h.lobar.annot with corresponding lobar.annot.ctab.
>>>>>>
>>>>>> Apologies if this question has come up before... a quick google
>>>>>> didn't
>>>>>> reveal anything.
>>
ital/parietal lobes based off the ?
>>>>> h.aparc.annot
>>>>> files in a FS 'label' dir? Ideally speaking, I'd like to have a
>>>>> ?h.lobar.annot with corresponding lobar.annot.ctab.
>>>>>
>>>>> Apologies if this question
there any tool in the freesurfer suite to allow me to get a
segmentation of the different lobes of the brain?
Thanks.
> Hi Fidel,
>
> that is deprecated code. What are you trying to do?
>
> cheers (and happy holidays)
>
> Bruce
> On Fri, 24 Dec 2010,
> FIDEL ALFARO ALMAGRO
Happy holidays for those who celebrate it today,
Hi. Is there any documentation on how to use mri_mark_temporal_lobe
application and what is its output? I cannot find any.
Thanks in advance.
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Happy holidays for those who celebrate it today,
Hi. Is there any documentation on how to use mri_mark_temporal_lobe
application and what is its output? I cannot find any.
Thanks in advance.
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ht
what you want). Or you
> can
> look at the aparc+aseg.mgz, which combines the subcortical and cortical
> labelings into a single volume.
>
> cheers
> Bruce
>
>
>
> On Mon, 20 Dec 2010, FIDEL ALFARO ALMAGRO wrote:
>
>> Thanks mr Fischl, but these surfaces are a
lated -aparc
>
> will bring up and show the lh.aparc.annot on top of the inflated
> surface. You can also load them from the tksurfer interface using
> file->label->import annotation
>
> cheers
> Bruce
>
> On Mon, 20 Dec 2010, FIDEL ALFARO ALMAGRO wrote:
>
>>
&
Hi,
I am pretty new in freesurfer and I do not know if this question has been
answered before (It is difficult to search for 1 basic question), so I
will post it anyways:
- Is there any segmentation/labeling in freesurfer that allows the user to
identify all the sulci of an MR image? I have done
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