ut it on our filedrop?
>
> thanks
> Bruce
> On
> Thu, 27 May 2010, Elias Kersten wrote:
>
> > One additional note: I had previously processed this subject through
> > FreeSurfer version 4.0.2 without any problems. For some reason this
> > problem only occurred up
suggestions?
Thanks,
Elias
On Tue, 2010-05-25 at 14:25 -0500, Elias Kersten wrote:
> I tried the recommended syntax below for looking at the surfaces and
> they look fine in all three views (coronal, horizontal and sagittal).
> And the surfaces seem consistent with other subjects I
all the surfaces look ok? Try looking at them with
>
> tkmedit subjectname orig.mgz -seg aseg.mgz -surfs
>
>
>
> Elias Kersten wrote:
> > The subcortical structures, brainstem, thalamus, cerebellum appear to be
> > labeled correctly, but the rest of the brain
chl wrote:
> > Not sure then. Krish: can you take a look?
> >
> > On Tue, 25 May 2010, Elias Kersten wrote:
> >
> >
> >> I loaded in lh.white and rh.white and the white and pial surfaces look
> >> fine, as does the aseg.mgz.
> >>
> >
I loaded in lh.white and rh.white and the white and pial surfaces look
fine, as does the aseg.mgz.
Thanks,
Elias
On Tue, 2010-05-25 at 09:08 -0400, Bruce Fischl wrote:
> Hi Elias,
>
> have you looked at the surfaces? Are they correct?
>
> Bruce
> On Mon, 24 May 2010,
>
Hi,
I am trying to run a subject through the entire recon-all pipeline.
However, I noticed the second to last step, "-wmparc", was taking a very
long time (days).
Looking over the data, the aparc+aseg.mgz file is almost all labeled as
"Left-Cerebral-White-Matter", including the background. Als
