Re: [Freesurfer] Fwd: using CAT12 segmentation for PVC {Disarmed}

External Email - Use Caution Dear, Would there be another option to fix this? Kind regards Donatienne Op do 5 nov. 2020 om 17:38 schreef Donatienne Van Weehaeghe < donatiennevanweehae...@gmail.com>: > The subcortical structures were not delineated correctly, espec

Re: [Freesurfer] Fwd: using CAT12 segmentation for PVC {Disarmed}

hink CAT creates white or pial surfaces, so no. What is wrong > with your FS analysis? > > On 11/5/2020 2:15 AM, Donatienne Van Weehaeghe wrote: > > External Email - Use Caution > Dear, > > The segmentation using Freesurfer was incorrect, however we have a good > s

[Freesurfer] Fwd: using CAT12 segmentation for PVC

External Email - Use Caution Dear, The segmentation using Freesurfer was incorrect, however we have a good segmentation from Cat 12. Can we use this segmentation for PVC in PETsurfer? Kind regards Donatienne ___ Freesurfer mailing list

Re: [Freesurfer] pvc error

right. How did you create suv.reg.lta? > That file should have the name of the subject in it. Also, no need to > specify the full path to the --seg (so, just --seg gtmseg.mgz is ok). > > > > On 4/26/2019 2:05 AM, Donatienne Van Weehaeghe wrote: > > External Email -

Re: [Freesurfer] pvc error

/Boston_final_analysis/VT/Vt_all/${word}/PVC/gtmpvc.output.spmreg --no-rescale Kind regards Donatienne Op do 25 apr. 2019 om 17:44 schreef Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu>: > can you send command line and terminal output? > > On 4/25/19 10:37 AM, Donatienne Van

[Freesurfer] pvc error

External Email - Use Caution Dear freesurfer experts, I am running the rbv pvc correction on a mac system and encountered the following error. mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz, -1): c

Re: [Freesurfer] VT images from pmod to freesurfer

l command line for that program? > > On 3/29/19 11:01 AM, Donatienne Van Weehaeghe wrote: > > External Email - Use Caution > Dear, > > The Freesurfer program generated the error after multiple comparison > corerction. > > Thank you for your help. > > Kin

Re: [Freesurfer] VT images from pmod to freesurfer

generated the error? What is the full command line for that > program? > > On 3/21/19 12:49 PM, Donatienne Van Weehaeghe wrote: > > External Email - Use Caution > > Dear, > > > I encountered a problem when going from pmod to freesurfer. > > > I made Vt

[Freesurfer] VT images from pmod to freesurfer

External Email - Use Caution Dear, I encountered a problem when going from pmod to freesurfer. I made Vt images in pmod using the logan plot, then I used the following commands to convert them to freesurfer space: #flirt -noresample -in /autofs/cluster/atassigp/Users/Donatie

Re: [Freesurfer] Segmentation fault

namens Greve, Douglas N.,Ph.D. Verzonden: donderdag 14 maart 2019 17:17:54 Aan: freesurfer@nmr.mgh.harvard.edu Onderwerp: Re: [Freesurfer] Segmentation fault Can you send the command line with out variables and the full terminal output? On 3/14/19 8:48 AM, Donatienne Van Weehaeghe wrote

Re: [Freesurfer] Segmentation fault

] Segmentation fault External Email - Use Caution > On March 13, 2019 at 9:18 PM Donatienne Van Weehaeghe > wrote: > The code I tried to run: > > #mri_gtmpvc --i SUVR_cerebellum.nii.gz --reg suv.reg.lta --psf 5 --seg > /gtmseg.mgz --default-seg-merge --auto-mas

[Freesurfer] Segmentation fault

External Email - Use Caution Dear, I encountered the following error when I tried to run mri_gtmpvc -- rbv: Segmentation fault (core dumped) First I performed the PET to orig registration using spmregister, secondly I tried with the registration using mri_coreg but the error