External Email - Use Caution
Dear Dough,
The terminal output: HV_02_11_p2x7
mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz,
-1): could not open file
ERROR: loading
/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz
This is needed for RBV
The command line: mri_gtmpvc --i
/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/VT/Vt_all/${word}_lin_T1.nii.gz
--reg
/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/${word}/mri/suv.reg.lta
--psf 5 --seg
/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/${word}/mri/gtmseg.mgz
--default-seg-merge --auto-mask 5 0.01 --rbv --o
/DATA_PETMR/data_donatienne/Boston_final_analysis/VT/Vt_all/${word}/PVC/gtmpvc.output.spmreg
--no-rescale
Kind regards
Donatienne
Op do 25 apr. 2019 om 17:44 schreef Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu>:
> can you send command line and terminal output?
>
> On 4/25/19 10:37 AM, Donatienne Van Weehaeghe wrote:
> >
> > External Email - Use Caution
> >
> > Dear freesurfer experts,
> >
> > I am running the rbv pvc correction on a mac system and encountered
> > the following error.
> >
> >
> mghRead(/Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/unknown/mri/orig.mgz,
>
> > -1): could not open file
> >
> > The subjects directory is
> >
> Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair,
>
> > the orig files are located in
> >
> Volumes/DATA_PETMR/data_donatienne/Boston_final_analysis/Donatienne/Analyses_freesurfer/recon_flair/$subjectname
> >
> > Thank you!
> >
> > Kind regards
> > Donatienne
> >
> > _______________________________________________
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> > Freesurfer@nmr.mgh.harvard.edu
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>
>
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