[Freesurfer] patches from labels

2007-04-06 Thread Don.Rojas
To all, I'm interested in creating some flattened patches from a region of auditory cortex. I have done the full recon-all processing on the datasets with version 3.0.4. Is there some way to create patch files without manually tracing the region you want to flatten in tksurfer? Is there a w

[Freesurfer] statistical power analysis

2007-01-08 Thread Don.Rojas
Hello all, I have just completed a group analysis of cortical thickness, including running the full Monte Carlo simulation to obtain cluster-wise multiple comparison corrections. Now I would like to know, for the clusters I'm interested in, how best to go about doing a statistical power analysis

[Freesurfer] glutInit bug

2006-08-08 Thread Don.Rojas
Title: glutInit bug Dear List: I saw that there was a known issue with glutInit on Debian systems that caused problems with tksurfer.  I just thought I'd report that although tksurfer (Freesurfer 3.0.3 stable) runs without error on my two Ubuntu systems (32 bit and 64 bit), I get the same so

RE: [Freesurfer] FreeSurfer Newbie can't get working with FSL onMac OS 10.4

2006-06-29 Thread Don.Rojas
Marc, Or you can set the path to your own, newer fsl with something like setenv FSL_DIR /usr/local/fsl if you'd rather not use the fsl distro that comes with freesurfer. Don > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of > Nick

RE: [Freesurfer] FS on Fedore Core5

2006-04-17 Thread Don.Rojas
Title: Re: [Freesurfer] FS on Fedore Core5 I had the exact same problem on x64 Ubuntu with both 32-bit and 64-bit FS distros.  After installing the most recent nVidia graphics driver, either distribution works fine. From: [EMAIL PROTECTED] on behalf of Ryuichiro HashimotoSent: Mon 4/17/

[Freesurfer] tcl/tk problem

2005-02-01 Thread Don.Rojas
I’m having the same difficulty described with tksurfer and other commands described in a previous thread:   http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2005-January/000658.html   The error is the same for tksurfer and tkmedit:   tksurfer: error while loading shared libraries: