Re: [Freesurfer] manual talairach details

2009-06-15 Thread Deane Aikins
It is a bad skull strip. I am increasing watershed param and will try autorecon2. Deane Quoting Bruce Fischl : > Did you check the skull strip? You can send it to us if you want and > we will take a look. > > > > On Jun 15, 2009, at 10:43 AM, Deane Aikins > wrot

Re: [Freesurfer] manual talairach details

2009-06-15 Thread Deane Aikins
adly wrong - that step should only take a couple of minutes. > Did you check the talairach visually? It may need to be manually corrected. > > cheers > Bruce > On Fri, 12 Jun 2009, Deane Aikins wrote: > > > I'm rerunning it with -no-talcheck. It

Re: [Freesurfer] manual talairach details

2009-06-12 Thread Deane Aikins
for > that cohort over the adults in the default target we use. > > Nick > > On Fri, 2009-06-12 at 09:43 -0400, Deane Aikins wrote: > > > > Hello, > > > > I had a Talairach QA check failure, with the error log indicating a Z = -8 > which > > was below

[Freesurfer] manual talairach details

2009-06-12 Thread Deane Aikins
just bag it and use -notal-check? The majority of my patient set ran without errors. Thank you! Deane Aikins, PhD Director, Cognitive Neuroscience Laboratory National Center for PTSD Clinical Neuroscience Division Assistant Professor, Department of Psychiatry Yale Sch

[Freesurfer] libexpat.so.1 error

2008-05-29 Thread Deane Aikins
I'm installing v4.0.4 on a CentOS 4.1 i686 computer. When I go to run tkmedit, I get an error regarding libexpat.so.1. Do I need a file that is specifically for the i686 or will a lobexpat.so.1 for i586 work? Thanks, Deane ___ Freesurfer mailing li