[Freesurfer] qdec visualization problems

Hi, I am having trouble running qdec over an NX session. I downloaded a FreeSurfer installation (5.3.0) to a network drive (/cluster/neuromind/dwakeman/software/freesurfer/). The installation has no trouble running recon-all; however, when I try to run qdec, I get vtk errors (see below): ERRO

Re: [Freesurfer] mri_surf2surf error - Return code 254

Hi John, It seems weird that you are using .mgz files (this suffix is for volume files) with mri_surf2surf (whose inputs should be surfaces). Also, it seems that several of the options you are trying I don't believe exist at least according to the wiki (e.g. -cortex -fwhm). Are you sure you are us

[Freesurfer] read_patch.m

Hello, The code in read_patch.m seems strange in the following versions 4.0.1 & 4.3.0. I could be wrong, but usually you have a section at the top describing it, and it doesn't seem to be declared as a function. I have checked the Release Notes and there doesn't seem to be a description of th

[Freesurfer] Re: Freesurfer Digest, Vol 60, Issue 30

Hi Devdutta, I'm fairly certain (i.e. correct me if I'm wrong people) that this average brain looks correct. Some of the gyri and sulci are more pronounced on the group inflated cortex than on the individuals, because in the averaging process these are more consistent across participants (lik

Re: [Freesurfer] tksurfer tcl

It would be a handy way of titling figures. Dan > Hi Dan, > > I'm not sure this feature is supported. What did you want to do with it? > > Bruce > On > Tue, 4 Mar 2008, Daniel Wakeman wrote: > >> Hi, >> >> Sorry, As in View>>Caption. In t

Re: [Freesurfer] tksurfer tcl

Hi, Sorry, As in View>>Caption. In the menu bar. Thanks Dan > What caption are you refering to? > > Graham > > At 3/4/2008 07:44 AM, you wrote: >>Hello, >> >>Is there a way to adjust the caption (at least turn it on and off) in a >>tcl script. I couldn't find any information on the wiki. >> >>C

[Freesurfer] tksurfer tcl

Hello, Is there a way to adjust the caption (at least turn it on and off) in a tcl script. I couldn't find any information on the wiki. Cheers, Dan -- ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mail

Re: [Freesurfer] mri_surf2surf

mi lh > > Try it without the --sval (it will get the sval from the xyz in the > surface). > > doug > > > > > On Sun, 17 Feb 2008, Daniel Wakeman wrote: > >> Hi Doug, >> >> Thanks. >> >> I tried this and got the following: >> >

Re: [Freesurfer] mri_surf2surf

riginally > programmed to accept surface overlay and not surfaces themselves. > --sval-xyz indicates that the input is a surface. --tval-xyz indicates > that the output should be saved as a surface instead of an overlay. > > doug > > > Daniel Wakeman wrote: > >>Hi, &

[Freesurfer] mri_surf2surf

Hi, I have a question (I believe about mri_surf2surf). First, I'll describe my goal: I want to take a surface created with mri_tessellate and modified with mris_smooth and convert it to an isomorphic equally subdivided icosahedron (like mri_watershed creates). e.g. take the lh.smseghead created

[Freesurfer] OpenGL

Hello, I am configuring a Freesurfer installation for two different types of computers (headless servers and workstations). For both sets of computers we want any non-OpenGL commands that are run to first go through python scripts which load balance (these are working fine); however we have