Re: [Freesurfer] LGI trouble with Matlab

2018-05-18 Thread Buse Merve Ürgen
External Email - Use Caution Hi, probably you need to add MATLAB path to Freesurfer's $PATH variable. The following link may help: http://www.manuelschutze.com/?p=297 On 18 May 2018 at 12:02, subin oh wrote: > External Email - Use Caution > > Hello, > > I downloaded

Re: [Freesurfer] Local gyrification index - vertex-wise analysis values

2017-11-08 Thread Buse Merve Ürgen
in over the ROI > > >> On 11/07/2017 12:57 PM, Buse Merve Ürgen wrote: >> Dear Freesurfers, >> >> I have two questions: >> >> 1) In the last stage of the recon-all -s -localGI analysis, >> local gyrification index values are calculated at each pial ve

Re: [Freesurfer] Local gyrification index - vertex-wise analysis values

2017-11-07 Thread Buse Merve Ürgen
ks, -Buse On 5 November 2017 at 19:54, Buse Merve Ürgen wrote: > Dear Freesurfer developers, > > I would like to run Local Gyrification Index analysis for a group of > healthy controls and a single patient. After running recon-all -s > -localGI command, we get lh.pial_lgi and r

[Freesurfer] Local gyrification index - vertex-wise analysis values

2017-11-05 Thread Buse Merve Ürgen
Dear Freesurfer developers, I would like to run Local Gyrification Index analysis for a group of healthy controls and a single patient. After running recon-all -s -localGI command, we get lh.pial_lgi and rh.pial_lgi surf files. In the last stage of this analysis, local gyrification index values

[Freesurfer] Desikan Killiany Atlas measurements

2014-05-21 Thread Buse Merve Ürgen
Dear all, I want to get the measurements of meancurvature, thickness, white matter volume and gray matter volume based on Desikan-Killiay Atlas. I would like to learn whether the commands I used to get them are the correct ones (in terms of content) & for Desikan Killiany atlas? *For meancurv: * a

Re: [Freesurfer] One sample t-test in Qdec

2014-03-18 Thread Buse Merve Ürgen
ult analysis of Qdec is actually doing? Which statistics exactly? Since I have only one patient, is it computing the patient's mean as 0? Thanks in advance, Buse. -- Hi Buse, I think this is a two-sample t-test where the 2nd sample is your individual. You should be able to this in qdec doug

[Freesurfer] One sample t-test in Qdec

2014-03-05 Thread Buse Merve Ürgen
Hello, I would like to learn whether we can conduct one-sample t-test using Qdec. I'm working on a single-case study, and I want to compare a single subject's data with a group of controls (to see how this specific subject is different from the group) in terms of volume, thickness and meancurvatur