marching cubes.
On 11/05/2018 01:07 PM, Bruss, Joel E wrote:
>
> External Email - Use Caution
>
> Bruce-
>
>
> Thank you for the reply. I'll try to summarize what I've done (and
> please see the attached jpeg showing my coordinate examples).
>
>
>
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Can anyone help?
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruss, Joel E
Sent: Friday, October 19, 2018 9:26:39 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] [External] Re
ere near
what I see in Freeview.
-Joel
________
From: Bruss, Joel E
Sent: Tuesday, October 16, 2018 3:53:19 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] [External] Re: Nonsensical Vertex Coordinates, please
help with interpretation
Attached is a scr
FreeView uses 0-based indexing and matlab uses 1-based?
Eg, vertex 234741 in Freeview would be 234742 in matlab. You seem to be
using 234740 in matlab below
On 10/15/2018 05:11 PM, Bruss, Joel E wrote:
>
> External Email - Use Caution
>
> I'm trying to make a surface file
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I'm trying to make a surface file from a subject's head and to map coordinates
to that surface. If I run:
mri_seghead --invol $SUBJECTS_DIR/$sub/mri/T1.mgz --outvol
$SUBJECTS_DIR/$sub/mri/seghead.mgz --fill 255 --thresh1 20 --thresh2 20
--nhitsmin
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Ah, that makes sense. Short of calculating a Euclidean distance between every
surface RAS and my point I'd like on the surface, then grabbing the one with
the shortest distance, is there a function/utility in FreeSurfer that will
generate the closes
, 2018 at 12:40 PM Bruss, Joel E
mailto:joel-br...@uiowa.edu>> wrote:
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If I load, say, orig.mgz and lh.pial, in FreeView and lay my cursor on a point,
I can see RAS (and surfaceRAS) as well as TKReg RAS (orig) coordinates.
Following the
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If I load, say, orig.mgz and lh.pial, in FreeView and lay my cursor on a point,
I can see RAS (and surfaceRAS) as well as TKReg RAS (orig) coordinates.
Following the steps laid out on the CoordinateSystems web page I can convert
back and forth betw
Greve
[gr...@nmr.mgh.harvard.edu]
Sent: Wednesday, July 12, 2017 5:21 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [External] Re: [Freesurfer] Differences in volume between
mri_segstats and mris_anatomical_stats
what is your mri_glmfit command line?
On 07/12/2017 02:32 PM, Bruss, Joel E wrote
I have a group of subjects, scans at time1 and time2 that have been run through
the longitudinal stream. I have a group of ROIs in MNI space that I've been
able to push up to fsaverage following the VolumeRoiCorticalThickness tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCortical
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