[Freesurfer] new version of mri_label2label

2014-08-05 Thread APRIL CLAUSEN
I believe there was a bug in the mri_label2label script in the 5.3 install of FreeSurfer for Mac OS Lion (10.7 and up), and that this has been fixed. Can someone provide instructions on how to download and where to (directory) install this script. April Clausen__

Re: [Freesurfer] holes in inflated using mris_label2annot

2014-08-02 Thread April Clausen
, 2014, at 4:12 PM, Douglas N Greve wrote: > what was your command line? > > On 07/21/2014 03:43 PM, April Clausen wrote: >> Hi Dr. Greve, I tried to upload the images with the Martinos Centre Dropbox >> but I could not activate the dropbox … so the images are attached. The 6

[Freesurfer] holes in inflated using mris_label2annot

2014-07-14 Thread April Clausen
When viewed on the inflated surface in tksurfer, we are seeing “holes” in annot files we created defining our own ROIs. We first created 6 label files on fsaverage then mapped these 6 label files to 5 different subjects using mri_label2label. Once the 6 label files were mapped to each subject, w