Re: [Freesurfer] Extracting cortical thickness values for each subject using labels

bMJOJY0uIz_LMPNGNff9ofQdi41lbl_z4LOot-PyyIAOkplCuie52WEoC25283K_FLApVE15eUqnyiaVpMRry06hp5_XGPLrNRm50KNv6woZtoPOOJi35Ep6MuRJkBknO4l1bQnjCysJ1851eBgeeHAOcGNtQnlEJSxyMSyXX9hlATC-lcdqDSa3tSwnR3HxF8HRuwC8fhqYKaAFcuhOJ6g/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Fmri_segstats > > Best, > > Yujing > > > -Original Message- > From: freesurfer-boun...@

[Freesurfer] Extracting cortical thickness values for each subject using labels

External Email - Use Caution Hi I have made custom labels to use as ROIs, I was wondering if there was any way to get thickness values at each vertex for a participant but just within the areas covered by specific label files, So from the lh.thickness.fwhm0.fsaverage.mgh file,

[Freesurfer] Dimension mismatch MRIS PREPROC

External Email - Use Caution Hi I am attempting to create a group file using MRIS PREPROC My command is as follows mris_preproc --fsgd brainmorph.fsgd --cache-in thickness.fwhm10.fsaverage --target fsaverage --hemi rh --out mripreproc-rh-thickness.mgh But I am receiving the e

Re: [Freesurfer] Smoothing with surf2surf

ave everything in the same line. > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Akansha Mahesh > Naraindas > Sent: Tuesday, May 30, 2023 10:1

Re: [Freesurfer] Smoothing with surf2surf

er version you are using. > > Best, > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> On Behalf Of Akansha Mahesh > Naraindas > Sent: Tue

[Freesurfer] Smoothing with surf2surf

External Email - Use Caution Hi I have been attempting to perform just the smoothing step on a series of subjects using surf2surf and I seem to be getting an error when attempting to this. My command is as follows mri_surf2surf --hemi lh \ --s fsaverage \ --sval combat_lh-1

[Freesurfer] Extracting statistical values from significant ROIs after running GLM

External Email - Use Caution Hi I have run a GLM using cortical thickness and a behavioural measure on specific ROIs, I have a query about extracting the statistical values, specifically the test statistic from the significant regions after running the GLM but prior to multiple

[Freesurfer] Resmoothing subjects that have already been standardised to fsaverage space

External Email - Use Caution Hi I have a query about resmoothing subjects after they have already been standardised to fsaverage space. We were thinking of using the normal steps for smoothing as specified below mri_surf2surf --hemi lh \ --s fsaverage \ --sval lh.gender_age.