[Freesurfer] fMRI paired analysis

2020-07-16 Thread Agnieszka Sabisz
External Email - Use Caution Dear Freesurfer team! I'm trying to make a statistics of resting state fMRI data in fsfast. I have one group of patients and two timepionts. I read how to perform the paired analysis in structural studies in freesurfer. In structural images the differen

[Freesurfer] T2 values from segmented areas

2020-04-14 Thread Agnieszka Sabisz
rk/asabisz/HTN_analizy/T2/HTN_Con_083_t2.stats The problem that I have is: I don't get values from --id 192 (corpus callosum) --id 3 and --id 42 - Cerebral Cortex. What I should add to my script? All the best Agnieszka Sabisz ___ Freesurfer mailing

Re: [Freesurfer] Fwd: eTIV and brainmask mismatch on Philips data

2019-09-10 Thread Agnieszka Sabisz
ferent than FS expects. I ran it with the -3T flag (which changes the > talairach atlas), and it seemed to run fine on that subject. Try it out. > best > doug > > On 8/19/2019 1:23 AM, Agnieszka Sabisz wrote: > > External Email - Use Caution > Dear Doug, > I uploa

Re: [Freesurfer] Fwd: eTIV and brainmask mismatch on Philips data

2019-08-19 Thread Agnieszka Sabisz
19 o 11:44 Agnieszka Sabisz napisał(a): > Dear Doug, > I uploaded the data by ftp in Windows 10. I hope You can see a tar file. > The file's name is HTN_Con_096 and it contains the subject's folder after > recon_all. Do You need any other data? > All the best > Agniesz

Re: [Freesurfer] Fwd: eTIV and brainmask mismatch on Philips data

2019-08-01 Thread Agnieszka Sabisz
2:44 Greve, Douglas N.,Ph.D. napisał(a): > That is a little strange. Can you tar up the data and upload it to > ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming > Let me know when it is there and what the file name is > > On 7/24/19 4:53 AM, Agnieszka Sabisz wrote: > > &