Re: [Freesurfer] [ext] Re: Freeview crash

External Email - Use Caution  Below are the commands I used to run freeview from the Freesurfer 7.4..0 release on a silicon Mac with an M2 processor running MacOS Sonoma 14.7.2 with Xquartz 2.8.5.  I put the freesurfer license.txt file under my home directory and set the FS_LICE

Re: [Freesurfer] [ext] Re: Freeview crash

External Email - Use Caution M3 max processor Anna Von: freesurfer-boun...@nmr.mgh.harvard.edu im Auftrag von fsbuild Gesendet: Donnerstag, 2. Januar 2025 19:46 An: freesurfer@nmr.mgh.harvard.edu Betreff: [ext] Re: [Freesurfer] Freeview cras

Re: [Freesurfer] [ext] Re: Freeview crash

External Email - Use Caution Yes, I’ve tried that as well. Freeview opens as an app bundle, but it crashes when I load a file. Interestingly, this is inconsistent—sometimes I can load a file without any issues, but most of the time, it crashes in the same way. I’ve this problem

[Freesurfer] LME pipeline for individual ROIs

External Email - Use Caution Hello FreeSurfer experts, I am using a mass-univariate pipeline to assess cortical thickness changes longitudinally at a regional level (based on the D-K atlas), and have been following this thread: https://secure-web.cisco.com/1gfQ9eWAEqDZ3DGmI9NL7

Re: [Freesurfer] Freeview crash

External Email - Use Caution  Are you running on an old Intel Mac or a Mac with one of the newer M1, M2, M3, M4 processors ? - R. On Jan 2, 2025, at 13:02, Wang, Ruopeng wrote:Have you tried running freeview as an app bundle? Or can you try running freev

Re: [Freesurfer] (no subject)

Try something like tkmeditfv subject nu.mgz -surfs On 1/2/2025 4:50 AM, Tommaso Mariani wrote: External Email - Use Caution I tried to open them from the console, but it gave me some errors about the directory, so I opened them from the ribbon menu command "load surface". Another u

Re: [Freesurfer] Freeview crash

Have you tried running freeview as an app bundle? Or can you try running freeview directly from the binary location? Like this: $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview On Jan 2, 2025, at 7:14 AM, Tietze, Anna mailto:anna.tie...@charite.de>> wrote: Hi, When I want to open files

[Freesurfer] preparing config file for Tracula

Dear Freesurfers, I am setting up the configuration file to run Tracula preproc. I have some doubts on some variables... * pedir: on my DTI protocol I have "PhaseEncodingDirection": "j-",so I assume it is AP * epifactor : I took it from "EchoTrainLength": 48 * echospacing: shall I take it

[Freesurfer] Freeview crash

Hi, When I want to open files with freeview, it crashes immediately. I tried my own recon-all output and the bert dataset. Can you help me? Operating system: Mac, Sonoma 14.7.1 Fressurfer version 7.4.0 XQuatz 2.8.5 licence.txt located in: /Applications/freesurfer/7.4.0/license.txt (can

Re: [Freesurfer] (no subject)

External Email - Use Caution I tried to open them from the console, but it gave me some errors about the directory, so I opened them from the ribbon menu command "load surface". Another uncommon thing is that, after loading the surfaces, it gives me an error about the reconstructio

Re: [Freesurfer] Recon-all Error: "ln: failed to create symbolic link 'lh.white.H': Operation not permitted"

External Email - Use Caution  Hello Pei-Ying,  It does not work to run freesurfer/recon-all command(s) on subject data that lives on a Windows formatted drive (in your case visible from inside the Linux VM via the mount point to drive d, /mnt/d).   The SUBJECTS_DIR needs to poin