[Freesurfer] Feature associations between recon-all and synthseg

2024-12-20 Thread Banerjee, Tania
External Email - Use Caution Hello, I am reaching out to seek guidance on associating brain features generated using SynthSeg (approximately 101 features for the whole brain) with those generated by Recon-All. Given the coarse nature of SynthSeg features, I assume that multiple

Re: [Freesurfer] Extracting just the eTIV from stats file.

2024-12-20 Thread Douglas N. Greve
When you say that it doesn't work, what do you mean? I was able to run your command line successfully in 7.1.1 On 12/18/2024 7:34 PM, Zeng, Victor (BIDMC - Keshavan - Psychiatry) wrote: External Email - Use Caution Hi guys, I need to extract the eTIV from a stats file Its like this

Re: [Freesurfer] Help

2024-12-20 Thread Huang, Yujing
Here are the steps to setup Freesurfer environment and run 'recon-all': 1.Source the correct Freesurfer environment needs to be sourced before running recon-all - https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux 2.Set 'SUBJECTS_DIR' to point to director

[Freesurfer] Help

2024-12-20 Thread Katherine Sawyer
External Email - Use Caution Hello, When trying to run recon-all I keep getting the following error message: mri_convert: Command not found. ERROR: Executable 'mri_convert -all-info failed! Is it missing from the distribution?' I just wondered what would be causing it and how t

[Freesurfer] help

2024-12-20 Thread 黄月虹
External Email - Use Caution > -原始邮件- > 发件人: freesurfer-requ...@nmr.mgh.harvard.edu > 发送时间:2024-12-20 20:43:35 (星期五) > 收件人: huangyueh...@stu.hznu.edu.cn > 主题: Welcome to the "Freesurfer" mailing list (Digest mode) > > Welcome to the Freesurfer@nmr.mgh.harvard.edu mailing

[Freesurfer] Fw: Welcome to the "Freesurfer" mailing list (Digest mode)

2024-12-20 Thread 黄月虹
External Email - Use Caution > -原始邮件- > 发件人: freesurfer-requ...@nmr.mgh.harvard.edu > 发送时间:2024-12-20 20:43:35 (星期五) > 收件人: huangyueh...@stu.hznu.edu.cn > 主题: Welcome to the "Freesurfer" mailing list (Digest mode) > > Welcome to the Freesurfer@nmr.mgh.harvard.edu mailing

[Freesurfer] mri_convert: Command not found

2024-12-20 Thread Katherine Sawyer
External Email - Use Caution Hello, When trying to run recon-all I keep getting the following error message: mri_convert: Command not found. ERROR: Executable 'mri_convert -all-info failed! Is it missing from the distribution?' I just wondered what would be causing it and how t