[Freesurfer] FreeSurfer Parcellation Using Glasser's Atlas (HCP-MMP1)

2023-11-27 Thread Boa Sorte Silva, Narlon
Hi there, I am hoping to extract cortical thickness and volume data from FreeSurfer-processed subjects using the HCP-MMP1 atlas (Glasser et al 2016 Nature). I have found many discussions in the email list but I wasn’t able to understand whether this procedure can be reliably done using .annot f

[Freesurfer] xhemi

2023-11-27 Thread Joost Janssen
External Email - Use Caution Dear Doug, The objective is to have _regional_ laterality index for thickness for aparc mapped to the left hemisphere. The following commands work without error but are they correct for meeting my objective? Thanks. surfreg --s $subject --t fsaverage_