[Freesurfer] Question about volumetric atlas ROIs overlap

External Email - Use Caution Hello, I have a general question about handing atlas ROIs after applying recon-all on a T1W image. Could you please clarify how I can minimize/prevent atlas ROIs overlap in volumetric subject-specific space when going from surface-based space to vol

[Freesurfer] Coordinates of Tracula clusters

External Email - Use Caution Hi Freesurfer Developers, I'm conducting along-tract statistics using trac-all -stat and mri_glmfit-sim in FS v7.3.2, and I'm hoping to produce coordinates of where significant clusters are located along the mean tracts in template space. I've attache

Re: [Freesurfer] freeview surface edgecolor overlay

External Email - Use Caution This has been fixed in the dev build and the upcoming v7.4. You can update freeview following the instructions here: https://secure-web.cisco.com/18RRIlfW8orAdONb8bSqGWriHwtoXhuC4U82129GHMM_ruuytXnN2a6KWWjlLZPYgJJgaLAPAebhHEwEu_enRieQsuAiHgjrI5TFZsd14

[Freesurfer] control.dat not working

External Email - Use Caution Dear Freesurfer subjects, After saving my control.dat file into the tmp folder and running the command line recon-all -autorecon2-cp -autorecon3 -s It does not seem to parse the control.dat file correctly and find the control points. This is what

[Freesurfer] freeview surface edgecolor overlay

External Email - Use Caution Dear freesurfer team, in freeview, setting surface edgecolor in axial/saggital/coronal slices to the overlay color seems to have stopped working between 7.1.1 and 7.2.0 (and up until 7.3.2). This might have been fixed in the development version meanw