Dear Emily,
These boundaries are mostly geometric and based on the atlas.
For the atlas building:
* the head/body boundary was place at the level of the uncal apex.
* For the body/tail boundary, I’ll defer to Jean Augustinack (CCed)
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
http://www.jei
External Email - Use Caution
Hi:
I installed the 22 march freesurfer developer version. I test
mri_synthseg with a CT image, but it shows me the following error:
"mri_synthseg --i /home/developer/Documents/sub-0001/H2.nii.gz --o
/home/developer/Documents/sub-0001 --cpu --ct
Tra
Hi John,
Can you try dcmunpack (https://surfer.nmr.mgh.harvard.edu/fswiki/dcmunpack)
instead?
Here is an example usage:
dcmunpack -auto-runseq -src -trg
-no-exit-on-error -dcm2niix
You will find the converted images in .
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Be
External Email - Use Caution
The Freesurfer VirtualBox instructions state: "login as the user "developer" in
the login menu. Get the password by sending an email request to the freesurfer
help list."
Despite asking this question multiple times, I am still unsure of how to obtain
External Email - Use Caution
What is the boundary FreeSurfer uses to distinguish between the hippocampal
head and body? This may be for each subfield. In any case, if you could let me
know the boundary, that would be great.
Thanks,
Emily
Emily C. Merz, Ph.D. (she/her)
Assista
External Email - Use Caution
Thank you.
I would appreciate feedback from developers on two issues.
1) mri_convert in FS v6 is unable to convert any mosaic DICOMs to Nifti
format. In FS 7.3.2, mri_convert was able to convert mosaic DICOMs to Nifti
in some subjects but failed for man
