Re: [Freesurfer] Using SPM segmentations in FreeSurfer

External Email - Use Caution Oh, sorry... Following the steps from the previous mail you should run this command: mri_mask brain.mgz new_segmentation.mgz wm.seg.mgz Best, Falk Von: freesurfer-boun...@nmr.mgh.harvard.edu im Auftrag von falk

Re: [Freesurfer] Using SPM segmentations in FreeSurfer

External Email - Use Caution Hi Nathan, well, once again, I can't be much of help with regards to your error message. Have you had a look at the data and does it looks reasonable up to that point? Which FreeSurfer version are you running? FreeSurfer needs to have the data in

[Freesurfer] Reading files from an external hard drive

External Email - Use Caution Hi FreeSurfer experts, I’m trying to open nifty/ DICOM files, which are stored in a hard drive (SEAGATE - Backup Plus Hub; Model: SRD0PV1). However, the files cannot be found in any of the folders on Freesurfer 7.1.0 of which operates on Visual Machi

Re: [Freesurfer] Tracula -prep error: cannot stat dwi_orig_las.1.bvecs

External Email - Use Caution Hi Anastasia! I copied the contents of the fixed version directly to the trac-preproc file located in the bin and then saved it there. I attach the file located in the bin folder of freesurfer just in case I did something wrong. Thanks! Ioannis P.