Re: [Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized

2022-01-20 Thread Tarumi Takashi
External Email - Use Caution Dear Dr. Yendiki, Thank you so much for this additional explanation. It’s clear now. Best regards, Taka > 2022/01/21 2:13、Yendiki, Anastasia のメール: > > > Yes, the tutorial was written when the 7.2 release was in the last stages of > development. Wh

Re: [Freesurfer] In the Desikan-Killiani parcellatino scheme, which parcellations contain the extrastriate cortex?

2022-01-20 Thread Ron Killiany
External Email - Use Caution Hi Knut, That's a good question. Anatomically striate cortex is located in the occipital lobe and is identified by a stripe of white matter that runs through the center of it. While this stripe is visible by the naked eye in gross specimens it is not

Re: [Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized

2022-01-20 Thread Yendiki, Anastasia
Yes, the tutorial was written when the 7.2 release was in the last stages of development. What happened between then and the final, released 7.2 was that it now just figures out that the input is 1D by checking the dimensions of the input, so you don't have to specify it on the command line. ___

Re: [Freesurfer] In the Desikan-Killiani parcellatino scheme, which parcellations contain the extrastriate cortex?

2022-01-20 Thread Fischl, Bruce
Hi Knut Yes, calcarine is a pretty good guess for location of V1, although we also produce an explicit estimate in the *exvivo* label files. And sorry, I don’t know Ron and Rahul’s parcels well enough to say what combo would give you visual cortex Bruce From: Knut J Bjuland Sent: Thursday, Ja

Re: [Freesurfer] In the Desikan-Killiani parcellatino scheme, which parcellations contain the extrastriate cortex?

2022-01-20 Thread Knut J Bjuland
External Email - Use Caution Hi Bruce, We're using FreeSurfer data from the parcellations to test hypotheses/models from the literature that include such terms as "extrastriate cortex". It is not always defined - but I guess the most common definition would be visual cortex tha

Re: [Freesurfer] mri_glmfit-sim error: Flag --1d unrecognized

2022-01-20 Thread Tarumi Takashi
External Email - Use Caution Dear Dr. Yendiki, Thank you so much for your reply. Yes, the command can run without the "--1d" flag. But, I thought that the flag is "required for any along-tract analysis" as stated in your TraculaStatistics instruction and highlighted in the release