[Freesurfer] Open positions at The Ohio State University: Post-dococtoral Researcher, Psychometrician, & Study Coordinator

External Email - Use Caution The Clinical Neuroscience Lab, in the Department of Psychology, within the College of Arts and Sciences, seeks a Post-Doctoral Researcher (R29059), a Psychometrician (R13824), and a Study Coodinator (29068) to join our team. The Clinical Neuroscience

[Freesurfer] Local GI MRI_segstats error

External Email - Use Caution Hello, I am trying to run mri_segstats for local GI indices. I am getting a file not found error for /tmp/mri_segstats.tmp.sub-1007_ses_01/.lh.176.ctab I did not get an error message when running the recon-all -localGI command and I am using freesur

Re: [Freesurfer] error using mri_convert

External Email - Use Caution I have not tried dcmi2niix yet. I will see if this works for the files. Thank you. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Friday, October 8, 2021 12:37 PM To: freesurfer@nmr

Re: [Freesurfer] Question about fsaverage

And you can use read_annotation.m in $FREESURFER_HOME/matlab to load it Cheers Bruce -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Tim Schäfer Sent: Monday, October 11, 2021 4:32 AM To: Freesurfer support list Subject: Re: [Freesurfer] Question about fsav

Re: [Freesurfer] Creating a surface parcellation from a volume atlas

Hi Paul mri_vol2label maps the volume into an ascii label structure but has no knowledge of surfaces. You then need to run mri_label2label with options like –sample to sample it onto a surface cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Paul Dhami Sent: Sunday, Oct

Re: [Freesurfer] Question about fsaverage

External Email - Use Caution That file is in standard space, so if you want the Desikan parcellation, the files you are looking for are: * $FREESURFER_HOME/subjects/fsaverage/label/?h.aparc.annot Best, Tim -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of