[Freesurfer] A question regarding a Freeview command

External Email - Use Caution Dear FreeSurfer developers, I am trying to run a group analysis to test for an association between *gray matter volume* and a behavioral measure of interest. reacon-all ran OK for all my subjects as well as mris_preproc followed by mri_surf2surf, and f

Re: [Freesurfer] SAMSEG output orientation not the same as input images

Can you compare the template_coreg.mgz to the input image; they should be mostly aligned. If not, then the initial registration failed. On 9/28/2021 2:38 PM, daedalu...@aol.com wrote: External Email - Use Caution We have recently installed FS-7.1 and have tested a few “ADNI” images

Re: [Freesurfer] inter-hemispheric registration

Check out 1.3 in https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi On 9/28/2021 4:07 AM, Yu-Chi Chen wrote: External Email - Use Caution Dear FreeSurfer experts, My current analysis is for analyzing the vertices of the cortical surfaces. I'd like to have the same vertice numbers of th