External Email - Use Caution
Dear FreeSurfer Team,
As part of the ENIGMA consortium, research groups that contribute data need to
run certain standardized scripts to pre-process their data and create outputs
for subsequent quality control using FreeSurfer.
One issue that has re
Would it be possible for you to try FS 7.1 or the dev version? Freeview has
evolved greatly since 6.0 with a lot of added functionalities. There is also a
script called tksurferfv that runs freeview with arguments like tksurfer.
Ruopeng
On Jun 25, 2021, at 12:58 PM, Marlene Staginnus
mailto:ms
I guess doing it in matlab would be easiest
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Hye Min Shin
Sent: Friday, June 25, 2021 1:24 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Calculating group-wise Dice Similarity Coefficient
and corresponding surface map
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Dear Freesurfer team,
Sorry for posting this question but I have been trying different things and
nothing seems to work.
rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ recon-all -s sub-001_ses-BSL
-i sub-001_ses-BSL_T1w.nii -T2 sub-001_ses-BSL_T2w.nii
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Thanks!
Nárlon Cássio
Nárlon Cássio Boa Sorte Silva PhD (He, Him, His)
CIHR and MSFHR/PARF Postdoctoral Research Fellow
Aging, Mobility, and Cognitive Health Lab
Djavad Mowafaghian Centre for Brain Health
Department of Physical Therapy, Faculty of Med
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Thank you for the response Bruce.
I apologize for the confusion regarding surface map but what I was trying
is that I wanted to create a surface file that contains dice coefficients
for labels across the entire cortex. With your response, I think I can
Can you get the data to us? You can follow these instructions
From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymou
