Re: [Freesurfer] Freeview cmmd + F

2021-02-25 Thread Wang, Ruopeng
I don’t think older version has it. Ruopeng On Feb 25, 2021, at 3:49 PM, Boa Sorte Silva, Narlon mailto:narlon.si...@ubc.ca>> wrote: External Email - Use Caution Hi all, For FreeView version 1 for Mac is there a similar command that can be used to toggle all surfaces, similar to cmm

[Freesurfer] Freeview cmmd + F

2021-02-25 Thread Boa Sorte Silva, Narlon
External Email - Use Caution Hi all, For FreeView version 1 for Mac is there a similar command that can be used to toggle all surfaces, similar to cmmd + F in newest versions of the software? Thanks Nárlon Cássio Nárlon Cássio Boa Sorte Silva PhD (He, Him, His) CIHR/MSFHR Post

Re: [Freesurfer] Sulcal probability maps

2021-02-25 Thread Fischl, Bruce
Sorry, it doesn’t have the greatest help 😊 mris_spherical_average usage: mris_spherical_average [option] ... where which is one of coords label vals curv area so something like mris_spherical_average label lh sphere.reg Fro

[Freesurfer] postdoc opportunity in relaxometry and diffusion MRI

2021-02-25 Thread Corinna Bauer
External Email - Use Caution We are seeking a full-time postdoctoral fellow with experience in diffusion analysis with an emphasis on network-based approaches, NODDI, DKI, and tract-specific analysis. The NIH-funded project employs structural, diffusion, and relaxometry based MRI m

Re: [Freesurfer] Sulcal probability maps

2021-02-25 Thread Kristi Drudik
External Email - Use Caution Hi Bruce, Thank you for your reply! I have saved the sulcal labels as a .label file. I'm a bit confused - what flags did you use with this command to create a probability per vertex map? Best, Kristi From: freesurfer-boun...@nmr.mgh.harvard.edu O

Re: [Freesurfer] Samseg longitudinal processing

2021-02-25 Thread Jayachandra Raghava
External Email - Use Caution Hello Douglas, Thank you for your advice. As you have suggested, I have now used orig.mgz from the recon-all longitudinal processing stream as an input to Samseg longitudinal processing stream. For comparison, I have the following volumes 1) Left-Hip

[Freesurfer] Parcellation and volume calculation - Help

2021-02-25 Thread Rosalia Dacosta Aguayo
External Email - Use Caution Dear all, I would like to parcellate the brain and calculate the volumes, but I am unsure about the command lines I should use. I thought about first doing this: recon-all -subject subjectname -i /path//Artico1.nii.gz -all. Should I need any othe