[Freesurfer] command terminated by signal 11?

2021-01-24 Thread KennethSPrice
External Email - Use Caution Hell Freesurfers, When running recon-all on a T1 image, I keep getting the error "Command terminated by signal 11" during mris_fix_topology. After manually editing brainmask.mgz and wm.mgz, I made sure that there were no larger defects and ran recon

Re: [Freesurfer] command terminated by signal 11?

2021-01-24 Thread Fischl, Bruce
Can you send us the full output? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of KennethSPrice Sent: Sunday, January 24, 2021 5:01 PM To: Freesurfer support list Subject: [Freesurfer] command terminated by signal 11? External Email - Use Caution Hell Freesurfers, When runni

Re: [Freesurfer] lh.pial and rh.pial ALIAS, become lh.pialT1 and rh.pial T1 in Freeview

2021-01-24 Thread Horsng Junn
External Email - Use Caution Hi Erika, As I understand it, FreeSurfer 7.1.1 is like an entirely different pipeline from FreeSurfer 6.0. So discussing why one file is a regular file in one version and a symbolic link in another seems to be a moot point. I think it's advisable tha

Re: [Freesurfer] lh.pial and rh.pial ALIAS, become lh.pialT1 and rh.pial T1 in Freeview

2021-01-24 Thread Erika Nolan
External Email - Use Caution Hi Horsng, Thank you for you response. I am confused as to why AFAIK is happening to me, while this is not the case in FreeSurfer 6.0, and also the subject Bert in 7.1.1. My colleagues have also run the same subject and it is also not happening to t