Can you send us the full output?
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of KennethSPrice
Sent: Sunday, January 24, 2021 5:01 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] command terminated by signal 11?
External Email - Use Caution
Hell Freesurfers,
When running recon-all on a T1 image, I keep getting the error "Command
terminated by signal 11" during mris_fix_topology. After manually editing
brainmask.mgz and wm.mgz, I made sure that there were no larger defects and ran
recon-all again. Still terminated by signal 11.
Next, I tried:
recon-all -autorecon2 -autorecon3 -skullstrip -no-wsgcaatlas -s hires -clean-bm
:"Command terminated by signal 11". This time mris_fix_topology got through lh
and got stuck on rh.
Any idea on what to try next?
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