Hi Salah - You're probably running into this problem:
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg64575.html
You can edit the script $FREESURFER_HOME/bin/trac-preproc, search for
tkregister2, change it to tkregister2_cmdl, then try again.
a.y
F
It is the raw value.
On 4/9/2020 7:08 PM, Hua, Jessica wrote:
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I had a question regarding the output for permutation.
perm.th40.abs.y.ocn.dat -- the average value of each subject in each cluster
Is this average value the raw value of each subject, or does th
Also, are you running it with a T1 input or a T2? The file name looks
like it might be a T2.
On 4/10/2020 10:12 AM, Bruce Fischl wrote:
Hi David
did you check the skull stripping as suggested? Seems like the input
volume given to the CC finder was empty. Work backwards and find the
earliest
Hi David
did you check the skull stripping as suggested? Seems like the input
volume given to the CC finder was empty. Work backwards and find the
earliest volume where something is wrong
cheers
Bruce
On Fri, 10 Apr 2020, David
Schwantner wrote:
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Thank you in advance for the assistance!
I am running the following command:
recon-all -i 1131_T2_raw.nii.gz -s DS_T2 -all
The log is at
https://github.com/dschwant/mri_to_3d/blob/master/202004090853_error_recon-all.log,
and the nii file
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Thank you in advance for the assistance!
I am running the following command:
recon-all -i 1131_T2_raw.nii.gz -s DS_T2 -all
I have attached the log file. Here is the tail. As you can see, I am
running it in Ubuntu 18.04.4 under the Window
