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Thank you in advance for the assistance!
I am running the following command:
recon-all -i 1131_T2_raw.nii.gz -s DS_T2 -all
The log is at
https://github.com/dschwant/mri_to_3d/blob/master/202004090853_error_recon-all.log,
and the nii file is at
https://github.com/dschwant/mri_to_3d/blob/master/202004_DS_Brain_MRI/1131_T2_raw.nii.gz
.
Here is the tail of the log. As you can see, I am running it in Ubuntu
18.04.4 under the Windows Subsystem for Linux.
...
searching rotation angles z=[-9 5], y=[-22 -8]
searching scale 1 Z rot 5.3 global minimum found at slice 139.0, rotations
(-14.14, -1.42)
final transformation (x=139.0, yr=-14.141, zr=-1.420):
0.96940 0.02478 -0.24423 8.04082;
-0.02403 0.99969 0.00605 -41.07934;
0.24430 0.00000 0.96970 18.40543;
0.00000 0.00000 0.00000 1.00000;
mri_cc: no WM voxels found with norm > 40 -- check skull stripping
No such file or directory
Linux LT499318 4.4.0-17763-Microsoft #864-Microsoft Thu Nov 07 15:22:00 PST
2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s DS_T2 exited with ERRORS at Thu Apr 9 11:19:24 DST 2020
...
Is it just not enough "details" in the nifti file? I am trying the next
larger one now.
----------------------------
David - dschw...@gmail.com
----------------------------
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