Re: [Freesurfer] Highlighting single atlas structures in freeview

Hi Francesco, You're not going to be able to run any of the dev-released binaries on a centos4 VM. That's quite an old version. The minimum centos version that we support now is v6. I think your best bet is download a centos 6 (or 7) VM and install freesurfer 5 on that along with the dev freevi

[Freesurfer] Mismatch between glmfit results and mris_anatomical data in one hemisphere

External Email - Use Caution Dear FreeSurfer experts, In FreeSurfer (Darwin-OSX-stable-v6-beta-20151015 build, operating on Yosemite 10.10.5) I’m running into an issue that I would like to request your expertise on. The procedure I used: I have a dataset of 77 participants, w

[Freesurfer] Error in segmentSubjectT1_autoEstimateAlveusML

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to produce an automated segmentation of the hippocampal substructures and the nuclei of the amygdala (see hippocampal module https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala

Re: [Freesurfer] Thickness group normalization

External Email - Use Caution I got the idea but faced an issue with mris_preproc, the command is: mris_preproc --target 0_1 --s avg_subject_91_noexpopts --hemi lh --meas thickness --out avg_91_to_lh.mgh where 0_1 is target patient to map thickness, from avg_subject_91_noex