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How about running FreeSurfer on your T1w image?
Matt.
From:
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
on behalf of Renew Andrade
mailto:andradere...@yahoo.com>>
Reply-To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date:
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Hello community!
I have an issue while running recon-all -all in a dpi file. What do you suggest
as a solution?
Thank you!
Renes-MacBook-Air-2:~ andraderenew$ recon-all -all -i
/Volumes/TOSHIBA_EXT/otros/Académico/Research/image_processing/imaging-
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Hello,
I'm Alexandra, postgraduate student in Argentina.
I would like install and run FreeSurfer in Linux, I'm following the
instructions of '
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall' and I
obtained this output (correctly):
Setting
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Dear Dr Greve and Matt, your valable responses and explanations are highly
appreciated!! Thank you so much!
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Glasser, Matthew
Sent: Sunday, August 5, 2018 6:01 PM
To: Freesurfer support list
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If you have only two protocols “high quality” and “low quality", you could
presumably include a protocol variable as a covariate of no interest, thereby
removing any effects that correlate with protocol. For this to work ideally,
you would have simi
I thought I answered this question last week. See my rsponse below
I don't think it is correct conceptually. By including SNR as a
covariate, you are saying that you expect the thickness to increase with
higher SNR and decrease with lower SNR. This does not make sense to me.
It sounds like yo
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> Dear FS experts,
> I would like to inquire about including SNR as a covariate for the between
> groups comparison in cortical thickness. Is this procedure valid? I have some
> T1 images of low quality and the majority are high in quality. I reviewed
Hi Ritesh
you can use the vox2ras matrix to compute the RAS coordinates of any
voxel. Just give it column,row,slice,1 indices as the input vector.
cheers
Bruce
On Sun,
5 Aug 2018, Ritesh Mahajan wrote:
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Thanks Bruce.
Thanks Doug for clearing this. Can y
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Thanks Bruce.
Thanks Doug for clearing this. Can you please tell, how can i get back the
first voxel of input ?
Also, can you tell what mathematical formula or equation is used convert this
origin ?
Thanks,
Ritesh Mahajan
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