Re: [Freesurfer] Revisiting GM ROI list

2016-12-30 Thread P Taylor
FWIW, my final lists of regions that I think can be returned by default recon-all for the '2000' and '2009' parcellations are attached. Lists come from the FreeSurfer LUT, with an extra TISS__TYPE column of (grep-able) tissue labels compiled from mri_binarize.c and also just by checking names. (T

Re: [Freesurfer] Re-running recon-all in V6 {Disarmed}

2016-12-30 Thread Bruce Fischl
Hi Kevin yes, I think that should work. cheers Bruce On Fri, 30 Dec 2016, Kevin Aquino wrote: Hi all, When V6 is released I'd want to re-run all my (10) subjects through recon-all again (they were processed with v6 alpha). I'd like to keep all my wm edits, mask and control points, is it as e

[Freesurfer] Re-running recon-all in V6 {Disarmed}

2016-12-30 Thread Kevin Aquino
Hi all, When V6 is released I'd want to re-run all my (10) subjects through recon-all again (they were processed with v6 alpha). I'd like to keep all my wm edits, mask and control points, is it as easy as just running recon-all on the same folder again? They are 0.7mm so I'd like to keep all the c