Re: [Freesurfer] How to run part of TRACULA

2016-08-13 Thread Anastasia Yendiki
Hi Athanasia - TRACULA expects certains files named a certain way to be there at the end of each preprocessing step. These are described here: https://surfer.nmr.mgh.harvard.edu/fswiki/trac-all#Outputdirectoriesandfiles If you are using pre-existing files, you have to make sure that they follo

[Freesurfer] How to run part of TRACULA

2016-08-13 Thread Athanasia Metoki
Dear Freesurfer Developers, I am fairly new to image analysis and this is the first time I use Freesurfer. I have some DTI data and I have already preprocessed them and ran bedpostX using FSL. I ran probabilistic tractography on FSL as well to get the connectivity between two distinct brain areas