Hi Mahmoud,
Thank you for your clear and thorough response. I followed the steps exactly as
you suggested and everything up to step 6 seemed to work fine. However after
trying to mount the shared folder (step 6) I get an error message that "No such
device found".
Any comments/thoughts apprec
I had the same problem too, using VBox and running the .vdi version of
FreeSurfer with no modifications.
When the "recon-all" reach to the talairach phase, the program stops with
this error:
#
> #@# Talairach Thu Oct 8 20:16:43 EDT 2015
> /media/sf_NEU
Hi FS Experts,
When I use Qdec for Group Analysis,I come with an error.Here it is.
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer
FSFAST_HOME/usr/local/f
Hi Jung Mi
probably your disk is full or you don't have write permission to that
directory
cheers
Bruce
On Thu, 8 Oct 2015, Park, Jung Mi wrote:
Hello
When I tried to run mri_convert brain.mgz to get brain.nii to get betted
brain. nii,
I received an error message following next:
mri_con
I don't understand, you're command line is set up to create brain.nii.gz
not brain.nii.
Have you run out of disk space?
On 10/08/2015 06:49 PM, Park, Jung Mi wrote:
> Hello
>
> When I tried to run mri_convert brain.mgz to get brain.nii to get
> betted brain. nii,
> I received an error message f
Hello
When I tried to run mri_convert brain.mgz to get brain.nii to get betted
brain. nii,
I received an error message following next:
mri_convert -it mgz -i brain.mgz -ot nii -o brain.nii.gz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from brain.mgz...
TR=2530.00,
Hi Eugenio,
Just following up on my message from last week. The file you asked me to look
for does not exist and the folder it is supposed to be in also doesn't exist.
Is this something I should install?
Thanks!
Aarthi
From: freesurfer-boun...@nmr.mg
Hello Martin,
Could you please find any time to answer me ?
Many thanks !
Best regards,
Matthieu
Le 30 sept. 2015 13:57, "Matthieu Vanhoutte"
a écrit :
> Hi Martin,
>
> Thank you for helping !
>
> 1) What should I use for the parameter estimation: "mass univariate" or Novel
> mass-univariate
Hi Ruthi,
it is possible to add time points retrospectively without re-creating the base.
However this will likely induce a processing bias, as the 3rd time point is
treated differently from the first two. How big that is going to be nobody
knows (it depends on your data and on the number of ti
Hello,
Yes the dev builds are essentially a v6.0-beta and contain the
hippocampal subfields. We dropped active support of CUDA in favor of
openmp, but freesurfer v6 will still contain contain the CUDA binaries
and libraries that were shipped with the 5.3 release.
-Zeke
On 10/08/2015 01:08 PM
Hello Freesurfer experts,
I wanted to see if the nightly dev builds of freesurfer are v6.0 with
the new hippocampal subfields or if that download is in another section?
If so can you send me the proper download location? Also is CUDA support
still at 5.0 with this version or is there any update
Dear Experts,
How do I extract the cortical thickness of a region of interest (which showed a
group difference in the Qdec between-group analysis) for all the subjects so as
to correlate with other measures in SPSS? There is no .label file in the Qdec
folder; which file shall I use or do I hav
Hello,
When I create a label file, it looks something like this:
#!ascii label , from subject ECoG7_Output vox2ras=TkReg coords=white
111
1062 -19.007 -81.861 3.862 0.00
3917 -29.743 -75.417 2.343 0.00
6599 -37.731 -70.574 6.918 0.00
9428 -44.497 -65.013 8.765
Hi Bruce,
That worked. Thanks!
Ana
On 05.10.2015 17:56, Bruce Fischl wrote:
> Hi Ana
>
> you might need to fix the labeling in the aseg. If you can't get this to
> work feel free to upload and we will take a look
>
> cheers
> Bruce
> On Mon, 5 Oct 2015,
> Anastasia Klimovich-Smith wrote:
>
>> De
Dear all,
We have run recon-all longitudinal stream on two time points and now have an
additional time point we would like to integrate.
Since edits and analysis were already done using the 2 time points template, we
would like to avoid creation of a new template (by combining all time points)
Hi All,
I am currently doing resting state fMRI functional connectivity across the
cortical. Is it appropriate that I use Freesurfer cortical Parcellation altas
such as Desikan-Killany Atlas to extract time series?
Thanks!
Yun
___
Freesurfer mailin
They are fine.
Thank you.
2015-10-08 10:06 GMT+07:00 Bruce Fischl :
> I think it should be fine. Do the segmentations and surfaces look accurate?
>
> On Oct 7, 2015, at 10:54 PM, Thục Trinh wrote:
>
> Hi Freesurfer Experts,
>
> We are on the process of troubleshooting on all of our subjects and
Hello,i am a new user of freeesurfer.i am so sorry for nor helping you.Can
you do me a favor?Please show me how to use freesurfer mail list.Thanks a
lot.Just give me a link to freesurfer mail list ,for example.i will highly
appreciate it if you show me more in deail!i am looking forward for your
ea
Hi,
I’m stuck with the following problem: I can’t start up the VirtualBox for
Freesurfer5.3 because of a memory problem.
I put 12GB of patient data on the disk en ran two subjects successfully through
Freesurfer. However, I closed the VirtualBox and don’t seem to be able to
restart it.
My quest
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