We don't have anything to do this directly. However, we do have this tool:
http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
See if that meets your needs.
doug
On 2/17/15 12:49 PM, David Moreno-Dominguez wrote:
> Hello,
> I am performing clustering ofer data sampled to the fsaverage5 surfaces.
> I
Hello,
I am performing clustering ofer data sampled to the fsaverage5 surfaces.
I would now like to be able to do color matchign and other processes that
require a vertex correspondence across both surfaces.
I have noticed that the vertices do not correspond directly (vertex 25 of lh is
not the
Dear FreeSurfer Development Team,
An additional, but different question. One of my subjects has some sort of
hole (lesion) in the left temporal lobe (slides 3-5). I have attached a
powerpoint with screenshots in order to visualize the issue (
http://gate.nmr.mgh.harvard.edu/filedrop2/?p=3pr4d21h
Dear FreeSurfer Team,
For some of my brains, I cannot seem to help FreeSurfer trace the pial
surface near the insula for some (but not all) of my subjects. I have
attached a powerpoint file with screenshots to this link for NMR users (
http://gate.nmr.mgh.harvard.edu/filedrop2/?p=41pbame2sz8 )
A
Hi Mohamad:
1. The command is called dmri_pathstats. You can look for the full syntax
that's used by trac-all in the trac-all.log file.
2. That naming refers to the atlas that's used (it includes 33 subjects).
3. Sorry, tracula doesn't do exploratory tractography.
Best,
a.y
On Tue, 17 Feb
Hi Anastasia,
Kindly I have the following questions and I highly appreciate if you answered
me:
1. I would like to ask how Tracula do calculate the weighted metrics and
weighted volumes. Is there any command line that Tracula use in order to do
this process?
2. After running Tracul
Hi Barbara Anne - In each tract's directory, you'll find the tract as a
volumetric probability distribution in the file path.pd.nii.gz. You can
use that as an ROI to extract statistics from any other volume that's in
the same space as the tracts (native DWI space). To be consistent with the
F
Those volumes are in # of voxels. So you have to multiply them with the
volume of your voxel in mm3. If, say, your resolution is 2mm isotropic,
that'd be 2^3.
On Mon, 16 Feb 2015, Woo-Suk Tae wrote:
Dear FreeSurfer and TRACUAL expert
I would like to know the volume unit of TRACULA pathes in
Hi Anastasia,
Yes that seems to work! Thank you very much for all your help.
Best wishes,
Amanda
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Anastasia Yendiki
Sent: 12 February 2015 20:02
To: Freesurfer support list
Subject: Re: [Freesur
