Re: [Freesurfer] mri_surfcluster --centroid

Works fine! Thanks alot! ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this

Re: [Freesurfer] mri_surfcluster --centroid

try now On 12/22/2014 04:59 PM, Philipp Heimbeck wrote: > Dear Doug, > > I face the same problem ( > https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36985.html ), > but the current mri_surfcluster-version with the "--centroid" capability > can't be found at > ftp://surfer.nmr.mgh.ha

Re: [Freesurfer] mri_surfcluster --centroid

Dear Doug, I face the same problem ( https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg36985.html ), but the current mri_surfcluster-version with the "--centroid" capability can't be found at ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surfcluster any more.

[Freesurfer] mri_label2vol - output volume appears cut off

Hi all, I am having a problem with moving aparc+aseg to different dimensions. I have successfully resliced aparc+asegs for several other subjects, but the resliced volume for one subject appears cut-off at the bottom. The dimensions match for this subject's template and output volumes, and the o

[Freesurfer] Head motion during MRI acquisition reduces gray matter volume and thickness estimates

The paper Martin Reuter and the FS group wrote was featured in an article of Discover Magazine by Neuroskeptic. http://blogs.discovermagazine.com/neuroskeptic/2014/12/19/head-motion-structural-scans/#.VJhYkBSACk Reuter M, Tisdall MD, Qureshi A, Buckner RL, van der Kouwe AJ, & Fischl B (2014). Hea

Re: [Freesurfer] question about the fsgd design

Hi June, please remember to post to the list instead of us personally. thanks! The question for you is why does your input y file have only one input. How was it created? doug On 12/18/2014 05:32 AM, 강준 wrote: > > Thank your kind reply! > > I did it and the error is gone. > > However, now it

Re: [Freesurfer] Fwd: DICOM does not contain a Siemens ASCII header

I've put a version there that should be compatible with apple. doug On 12/20/2014 05:42 AM, Ben Eliezer, Noam wrote: > hi Doug — > > Did you have a chance to look into my problem? > > Could it be that the mri_convert executable in the link you sent is > not compatible with Apple IOS? > > Thanks

Re: [Freesurfer] including a vertex-specific covariate in mri_glmfit

Yes, you can use the --pvr flag (per-vertex regressor). You'll need to create a pvr file that is the exact same size as the file passed with --y. You will also need to account for the extra regressors in your contrast matrix. doug On 12/22/2014 10:12 AM, Righart, Ruthger wrote: > Dear Freesur

[Freesurfer] including a vertex-specific covariate in mri_glmfit

Dear Freesurfers, I have a question about mri_glmfit for surface analyses. I have until now used covariates which provided one value for each subject (e.g., Age) but was wondering if it is possible to use covariates that have different values for each vertex. I would like to perform a GLM anal

Re: [Freesurfer] quality check of T1 scans

you can start by telling us the scan parameters and resolution. You can also compute the gray/white CNR (or just tell us the gray and white mean and standard deviations about) cheers Bruce On Mon, 22 Dec 2014, Ashkan Faghiri wrote: > hello. > > we have some T1 scans from a previous experimen

[Freesurfer] quality check of T1 scans

hello. we have some T1 scans from a previous experiment. before starting to analyse them i wanted to know if there is any way to check if the quality of the images are good enough for a morphometric analysis. WRG A.Faghiri ___ Freesurfer mailing list Fr