after you run the source command can you type:
which mri_convert
and let us know what it says? This is not a FreeSurfer issue - it's a
problem with your path
Bruce
On Sat, 6 Sep 2014, Lei,
Chia-Ming wrote:
Thank you for the reply, Bruce. (Really sorry but I just changed my email
address
Thank you for the reply, Bruce. (Really sorry but I just changed my email
address, so I decided to reply again with the currently subscribed email...)
I'm running on Linux 3.13.0-35-generic with Ubuntu 14.04. I couldn't set up the
permanent shell switched to .tcsh, i.e. when I opened a new termi
Hi Reza,
On Sep 6, 2014, at 13:10 , Reza Rajimehr wrote:
> Hi,
>
> I have a basic question, but the answer can be useful for others as well.
>
> I am doing a customized preprocessing of monkey functional data in FS-FAST
> v5.3. After motion correction and before functional-anatomical
> regist
Hi Reza,
On Sep 6, 2014, at 13:47 , Reza Rajimehr wrote:
> I forgot to mention that I want to use undistorted EPI volumes for the
> functional-anatomical registration.
Well that is simple then, just undistorted the 3D EPI image you used as
template for motion correction and register t
Thank you for the reply, Bruce.
I'm running on Linux 3.13.0-35-generic with Ubuntu 14.04. I couldn't set
up the permanent shell switched to .tcsh, i.e. when I opened a new
terminal, nothing happened. So I deleted the .tcsh file I created and
manually input the following steps when I opened a te
You can set background color in freeview from Preferences.
Ruopeng
On Sep 6, 2014, at 9:57 AM, Bruce Fischl wrote:
> Hi Angela,
>
> sorry, I'm afraid not, although it is a pretty common request, so maybe
> Ruopeng can add it to freeview
> Bruce
>
> On Sat, 6 Sep 2014, angela.fav...@unipd.it
Hi Lars
which surface are you using? If it's the white surface you might try
looking at white matter volume to see if it is decreasing
cheers
Bruce
On Sat, 6 Sep 2014, Lars M. Rimol wrote:
Hi,
I have performed a longitudinal analysis using the lme module in FreeSurfer,
with this model:
Hi Angela,
sorry, I'm afraid not, although it is a pretty common request, so maybe
Ruopeng can add it to freeview
Bruce
On Sat,
6 Sep 2014, angela.fav...@unipd.it wrote:
> Dear all,
> Is there a way to visualize brains in QDEC (or tksurfer or freeview) with
> a white background?
> thank you fo
Hi Abel
what OS are you running on? Did you source the file
$FREESURFER_HOME/FreeSurferEnv.csh
?
cheers
Bruce
On Sat, 6 Sep 2014, Abel Lei
wrote:
Hi FreeSurfers,
I’m a very beginner to both the Linux OS and the FreeSurfer program. After
finally setting up the FreeSurfer, I was tryin
Hi,
I have performed a longitudinal analysis using the lme module in
FreeSurfer, with this model:
*intercept(random effect) + centered age + group + group x centered age +
sex*
I tested the effect of time with this contrast vector [ 0 1 0 0 0 ]. Dependent
variable is area.
Here, mapping the se
I forgot to mention that I want to use undistorted EPI volumes for the
functional-anatomical registration.
> Hi,
>
> I have a basic question, but the answer can be useful for others as well.
>
> I am doing a customized preprocessing of monkey functional data in FS-FAST
> v5.3. After motion correc
Dear all,
Is there a way to visualize brains in QDEC (or tksurfer or freeview) with
a white background?
thank you for any help
Angela
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Hi,
I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST
v5.3. After motion correction and before functional-anatomical
registration, I want to use fieldmap data to correct spatial distortions
of EPI d
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