Hi, I have a basic question, but the answer can be useful for others as well.
I am doing a customized preprocessing of monkey functional data in FS-FAST v5.3. After motion correction and before functional-anatomical registration, I want to use fieldmap data to correct spatial distortions of EPI data. So: My fieldmap data: dicom files from a fieldmap scan (there are actually two series of dicom files for that scan) My EPI data: fmc.nii.gz files in run folders Now I have three questions: 1) How can I unpack the fieldmap data? An example command ... 2) How can I use FS-FAST's epidewarp.fsl command for my dataset? Again an example command would be very useful. 3) How will the undistorted volumes be used later on in the FS-FAST analysis stream? Your help would be very much appreciated. Thanks, Reza _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
