[Freesurfer] bbregister coordinates

2012-01-02 Thread Gregory Kirk
Happy new year folks, i would like to get info on which axis the transformation info in the fregister_XXX.dat.param is w.r.t. comparing the log files with the values i think the first 3 are the translations and the next 3 the rotations. but i did not see w.r.t. which directions, i.e. LR,AP,IS

Re: [Freesurfer] recon all problem

2012-01-02 Thread Allison Player
Laouchedi, The log says the file name is too long perhaps because of the tmp dir file names. Allison On Mon, 2 Jan 2012, LAOUCHEDI MAKHLOUF wrote: hi everyone     i run recon-all on 200 subjects on a cloud system and i had the following message :    mp

[Freesurfer] Fw : recon all problem

2012-01-02 Thread LAOUCHEDI MAKHLOUF
--- En date de : Lun 2.1.12, LAOUCHEDI MAKHLOUF a écrit : De: LAOUCHEDI MAKHLOUF Objet: recon all problem À: freesurfer@nmr.mgh.harvard.edu Date: Lundi 2 janvier 2012, 11h15 hi everyone     i run recon-all on 200 subjects on a cloud system and i had the following message :   

[Freesurfer] recon all problem

2012-01-02 Thread LAOUCHEDI MAKHLOUF
hi everyone     i run recon-all on 200 subjects on a cloud system and i had the following message :    mpr2mni305 failed, see transforms/talairach_avi.log so i attached the corresponding log to this message. does anyone have an idea of the error thanks

Re: [Freesurfer] Insula annotation on cortical surface

2012-01-02 Thread Christophe Destrieux
Hi in the aparc.a2009s atlas several labels correspond to the insula : - Short insular gyri (G_insular_short) - Long insular gyrus and central sulcus of the insula were grouped together (G_Ins_lg_and_S_cent_ins) since the central sulcus of the insula was not deep enough to be seen on its whole l