Hi Bruce,
So for the following command:
bbregister --s bert --mov func.nii --init-fsl --reg register.dat
tkregister2 --mov func.nii --reg register.dat --surf
In the case of a retinotopy analysis, which files are register.dat and
func.nii?
Quoting Bruce Fischl :
> Hi Michelle
> Try
Hi Michelle
Try using bbregister.
Cheers
Bruce
On Jul 31, 2011, at 6:54 PM, Michelle Umali wrote:
> Dear Freesurfers,
> During my retinotopy analysis, I was getting very strange fieldsign
> data (blue and red speckles) and my polar and eccentricity data was
> limited to the occipital pol
Postdoctoral Fellowship: Multimodal Neuroimaging -MGH/Harvard Medical School
Job Description
A postdoctoral position is available with the TRANSCEND Research Program
(www.transcendresearch.org) at the Martinos Center for Biomedical Imaging
in Charlestown, MA (www.martinos.org) which is affiliated
Dear Freesurfers,
During my retinotopy analysis, I was getting very strange fieldsign
data (blue and red speckles) and my polar and eccentricity data was
limited to the occipital pole. It was suggested that I check
registration between the functional and anatomical.
I was looking up tkregi
yes, in some of the parcellations it corresponds to "unknown", which is
not cortical (e.g. the medial wall)
On Sun, 31 Jul 2011, Matt Glasser wrote:
Zero probably means ?no label.?
Peace,
Matt.
___
Zero probably means "no label."
Peace,
Matt.
_
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Forrest Sheng
Bao
Sent: Sunday, July 31, 2011 3:00 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] label value 0
hi,
I noticed an interesting thing today. I used read_annotation function in
matlab to load an .annot file, i.e.,
[Vertexes,Label,Colortable]=read_annotation(AnnotFile);
But some labels in Labels were 0's. They did not appear in the 5th column of
Colortable.table. And 0 was the only label that i
