Thanks so much for your input.
Could somebody please answer the second part of the question?
That is, ignoring the fact that the label looks a bit weird as it is, is the
overlay between the label and the volume okay, as seen in the second file I
attached in my first email? If not, any idea wha
Dear freesurfer experts,
I am having a problem in extracting ROI data using func2roi-sess, and any
help would be most appreciated. I wish to evaluate functional data in two
ROIs that I created using mri_cor2label (left and right amygdala). Here is
the command line:
func2roi-sess -roidef 54 -anal
Dear Freesurfer Users
I am trying to use mri_convert to reorient a nifti file. The file is a
bold sequence, but for some reason, mri_convert is only outputting the
first volume. I get this error as well:
WARNING: niiRead(): unknown time units 0 in 2010_10_20_21_bold_gp2.nii
Any idea regard
how much RAM do you have on your machine? For some reason gzip needs tons
of it
On Wed, 1 Jun 2011, Vanessa Lim wrote:
> Hi,
>
> I got freesurfer to run with this command:
>
> mri_ca_register -align-after -nobigventricles -mask brainmask.mgz -T
> ~/Desktop/freeSurfer/CG/mri/transforms/talairach.
Hi,
I got freesurfer to run with this command:
mri_ca_register -align-after -nobigventricles -mask brainmask.mgz -T
~/Desktop/freeSurfer/CG/mri/transforms/talairach.lta
~/Desktop/freeSurfer/CG/mri/norm.mgz
$FREESURFER_HOME/average/RB_all_2008-03-26.gca
~/Desktop/freeSurfer/CG/mri/transforms/t
Hi Jose, that won't do it. You need to create a surface with fewer
vertices. Try setting --trgicorder to 5 or 6 (your current value is
effectively 7). Run with --help to get a list of orders and their number
of vertices.
doug
Jose Luis Cantero Lorente wrote:
> Dear Freesurfers,
>
> I am trying
Dear Freesurfers,
I am trying to reduce the number of vertices to display with the wireframe
overlay on the inflated cortical surface. To this aim, I am using the following
command line:
mri_surf2surf --s Estudio_EHM_average --sval-xyz inflated --tval
/root/trabajo/freesurfer/subjects/Estudio
Hi Alan,
should work with asegstats2table:
asegstats2table --all-segs --subjects $ALL_TPN --segno $wmparcs \
-t table.wmparc.txt -d space --stats wmparc.stats
where $ALL_TPN contains all subjects and $wmpars the segmentation ids
Best, Martin
On Wed, 2011-06-01 at 12:44 -0400, Alan Francis wr
Hi All:
I am trying to extract Volumes from the WMParc files into a txt file. Just
as you have the *asegstats2table* command for segmentation stats and the *
aparcstats2table* command for parcellation stats, is there a command you use
to extract data from the wmparc.stats file? I tried manipulatin
1. is your installation 64b? is there a libXss.so in your /usr/lib64
dir?
2. was this run from scratch or rerun? if rerun, when was wm.mgz
created and by what release? if created by a 5.1beta release late march
to early april, it could have a bug responsible for this. if so, try
rerunning wit
Hi Jose, you can just turn on the wireframe overlay. I think it is under
the View menu.
doug
Jose Luis Cantero Lorente wrote:
> Dear Freesurfers,
>
> Is there a FS command to display tessellation on inflated cortical
> surfaces? Something similar to the attached file.
>
> Thanks in advance.
>
>
Dear Freesurfers,Is there a FS command to display tessellation on inflated cortical surfaces? Something similar to the attached file.Thanks in advance.Best regards,Jose---Jose L. Cantero, Ph.D.Laboratory of Functional NeuroscienceDepartment of Physiology, Anatomy and Cell BiologyUniversity Pablo de
Das Klinikum der Universität München ist eines der größten und
leistungsfähigsten Universitätsklinika in Deutschland und Europa. 45
Fachkliniken, Abteilungen und Institute mit einer exzellenten Forschung und
Lehre ermöglichen eine Patientenversorgung auf höchstem medizinischen Niveau.
Hieran si
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